Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0399
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    81   6e-17
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    26   1.8  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   3.2  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   3.2  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 81.0 bits (191), Expect = 6e-17
 Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
 Frame = +2

Query: 77  RGFKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEV 256
           R F+I L+QL+   DKS+N+  A  ++  A + G+ ++ LPE FNSPYGT YF++YAE +
Sbjct: 42  RAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPI 101

Query: 257 PSGETS-RALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWD 379
                S +ALS               PER + KLYNT  V+D
Sbjct: 102 EESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFD 143


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 228 SILMNMQRKCHRGRRAELYPKPLQKLECA*LEVP 329
           S L N+     R +RA +    +QKL C  L+ P
Sbjct: 356 STLRNLAASSERNKRAIIEANAIQKLRCLILDAP 389


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 209  NSPYGTKYFD-EYAEEVP 259
            NSP  TKYFD E+  E+P
Sbjct: 964  NSPTDTKYFDEEFTRELP 981


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 104 LSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFD 238
           L  G D  +++    K   ++K+   Q  A P   N+P  T+ FD
Sbjct: 275 LENGSDLKRSLGHNQKSDRVSKDVSPQHQANPSTLNNPLKTQNFD 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,547,072
Number of Sequences: 5004
Number of extensions: 28237
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)