Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0399
(395 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 75 3e-14
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 30 0.59
03_06_0668 + 35412258-35412527,35412635-35412728,35412853-354129... 29 1.8
01_07_0204 + 41974475-41976766 27 4.1
12_02_0129 - 13981684-13982529 27 7.2
12_02_0112 + 13783758-13784717 27 7.2
06_03_0527 - 21775649-21775743,21775840-21775927,21776150-217762... 26 9.6
06_02_0270 - 13613853-13614153,13614233-13614403,13614486-136153... 26 9.6
01_01_0978 + 7738232-7740848,7740929-7741320 26 9.6
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 74.5 bits (175), Expect = 3e-14
Identities = 43/107 (40%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Frame = +2
Query: 83 FKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEVPS 262
FK+AL QLSV DK++NIA+A + I A GA+LV LPE +N PY F EYAE++ +
Sbjct: 46 FKVALCQLSVTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYSNDSFPEYAEDIEA 105
Query: 263 G----ETSRALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTXE 391
G + +S+ ER KLYNTC V+ E
Sbjct: 106 GGDAAPSFSMMSEVARSLQITLVGGSISERSGNKLYNTCCVFGSDGE 152
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 30.3 bits (65), Expect = 0.59
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 188 VALPECFNSPYGTKYFDEYAEEVPSGETSRA--LSKXXXXXXXXXXXXXXPERYEKKLYN 361
V E +N PY + + E++ G + LS+ PER +L+N
Sbjct: 16 VLFQEIWNCPYSMETLPSHGEDIDGGASPSVSMLSEVAARRRITIVGGSIPERSSGRLFN 75
Query: 362 TCTV 373
TC V
Sbjct: 76 TCCV 79
>03_06_0668 +
35412258-35412527,35412635-35412728,35412853-35412968,
35414877-35414921,35415471-35415680
Length = 244
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 278 LCSSPPMALPLHIHQNTWFRKES*ST 201
+C SPP LPL H+ FR E+ T
Sbjct: 18 MCCSPPAFLPLRAHRRRIFRAEAMKT 43
>01_07_0204 + 41974475-41976766
Length = 763
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 116 PDKSKNIAQAVKEIHLAKEKG--AQLVALPE 202
PD N A+ ++E H +KE G A++V +PE
Sbjct: 229 PDPGPNYAKFMEEYHSSKEAGLHAEIVIVPE 259
>12_02_0129 - 13981684-13982529
Length = 281
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 50 VLRRATMLKRGFKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQL 187
+LRR + + GF++ L+ P+K +AQA++ + A L
Sbjct: 232 MLRRPPLSEAGFEVLSGLLTCNPEKRMTVAQALRHRWFKEADSASL 277
>12_02_0112 + 13783758-13784717
Length = 319
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 50 VLRRATMLKRGFKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQL 187
+LRR + + GF++ L+ P+K +AQA++ + A L
Sbjct: 270 MLRRPPLSEAGFEVLSGLLTCNPEKRMTVAQALRHRWFKEADSASL 315
>06_03_0527 -
21775649-21775743,21775840-21775927,21776150-21776236,
21776714-21776764,21776863-21776907,21777260-21777306,
21777380-21777444,21778301-21778467,21778539-21778607,
21778695-21778757,21778882-21778999,21779099-21779154,
21779242-21779349
Length = 352
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 22 YTLECYIHNGIETSDHVEKRFQDSINSTIGGSR 120
YTL+ Y + GI DHV KR+ D + G++
Sbjct: 219 YTLDMY-NAGIYPYDHVAKRYIDQKVELVSGTK 250
>06_02_0270 -
13613853-13614153,13614233-13614403,13614486-13615318,
13615401-13615746,13615940-13616127,13616238-13616408
Length = 669
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +3
Query: 192 PCRSASTLLTEPSILMNMQRKCHRGRRAELYPKP 293
P ++ + P ++ +R+C +G+ EL P+P
Sbjct: 373 PIKTTRKANSSPPLVKGQKRECGKGKVGELAPEP 406
>01_01_0978 + 7738232-7740848,7740929-7741320
Length = 1002
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 79 RFQDSINSTIGGSR*I*EYSAGCEGNPFS*RERGSIGGLAGVLQLSLRN 225
R SI IG + + E SA +GN S GS+GGL + +L LRN
Sbjct: 466 RLTGSIPPEIGSASKLYELSA--DGNMLSGPLPGSLGGLEELGRLVLRN 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,969,774
Number of Sequences: 37544
Number of extensions: 187595
Number of successful extensions: 347
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -