Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0399
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)                 89   9e-19
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   2e-18
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)          57   5e-09
SB_33972| Best HMM Match : CN_hydrolase (HMM E-Value=1.30321e-43)      30   0.78 
SB_51463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9)                   27   4.2  
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                       26   9.6  
SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014)                  26   9.6  
SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_6308| Best HMM Match : CDC73 (HMM E-Value=5)                        26   9.6  

>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
          Length = 242

 Score = 89.4 bits (212), Expect = 9e-19
 Identities = 46/100 (46%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +2

Query: 83  FKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEVPS 262
           F+I L+QL+V  +K +N+ +A ++I  A   GA++VALPECFNSPYGT+YF +YAEE+P 
Sbjct: 6   FRIGLVQLAVTANKLQNLQRAREKIKEAVAAGAKIVALPECFNSPYGTQYFKDYAEEIP- 64

Query: 263 GETSRALSKXXXXXXXXXXXXXXPER-YEKKLYNTCTVWD 379
           GE+S  L++              PER   +KLYNT   +D
Sbjct: 65  GESSNMLAEVAKETGAYIVGGSIPERASNRKLYNTSLSYD 104


>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
 Frame = +2

Query: 83  FKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEVPS 262
           F+I L+QL+V  +K +N+ +A ++I  A   GA++VALPECFNSPYGT+YF +YAEE+P 
Sbjct: 8   FRIGLVQLAVTANKLQNLQRAREKIKEAVAAGAKIVALPECFNSPYGTQYFKDYAEEIP- 66

Query: 263 GETSRALSKXXXXXXXXXXXXXXPERYEK-KLYNTCTVWD 379
           GE+S  L++              PER    KLYNT   +D
Sbjct: 67  GESSNMLAEVAKETGAYIVGGSIPERASNGKLYNTSLSYD 106


>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
          Length = 128

 Score = 57.2 bits (132), Expect = 5e-09
 Identities = 29/61 (47%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 200 ECFNSPYGTKYFDEYAEEVPSGETSRALSKXXXXXXXXXXXXXXPERYEK-KLYNTCTVW 376
           ECFNSPYGT+YF +YAEE+P GE+S  L++              PER    KLYNT   +
Sbjct: 1   ECFNSPYGTQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNGKLYNTSLSY 59

Query: 377 D 379
           D
Sbjct: 60  D 60


>SB_33972| Best HMM Match : CN_hydrolase (HMM E-Value=1.30321e-43)
          Length = 294

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 89  IALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFN 211
           IA+ Q++   D   N  Q  + I     KGA++V LPE F+
Sbjct: 9   IAICQMTCTADLEANFRQCQELIRKGSRKGAEVVFLPEGFD 49


>SB_51463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 278 LCSSPPMALPLHIHQNTW 225
           LCSSP +A   H+H N W
Sbjct: 2   LCSSPRVASEWHLHTNCW 19


>SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9)
          Length = 238

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 284 IELCSSPPMALPLHIHQNTWFRK 216
           IELC++P +A+   + + +WF++
Sbjct: 54  IELCATPMLAVETSVKRKSWFKR 76


>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +2

Query: 89  IALIQLSVGPDKSKNIAQAVKE----IHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEV 256
           +A+I+  V PD+ + I Q +KE    I L KE         + ++   G  +F+   + +
Sbjct: 676 VAVIKPEVEPDQRELIKQRIKEAGFKIQLQKEVTLSKELASQFYHEHEGKDFFEGLTDYM 735

Query: 257 PSGET 271
            SG T
Sbjct: 736 SSGPT 740


>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 216  LTEPSILMNMQRKCH-RGRRAELYPKPLQK 302
            LTEPS +  + + CH RG R ++  K  QK
Sbjct: 960  LTEPSNIKELVKACHSRGIREKMLQKNFQK 989


>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 287 WIELCSSPPMALPLHIHQNTWFR 219
           W+ L   P   LPL  H N WFR
Sbjct: 483 WLNLSKDPKKKLPLIFHVN-WFR 504


>SB_24005| Best HMM Match : TFIIB (HMM E-Value=0.0014)
          Length = 751

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +1

Query: 151 GNPFS*RERGSIGGLAGVLQLSLRNQ 228
           G+  + R+RGSI GL+ ++ L+L NQ
Sbjct: 127 GSLITTRQRGSIKGLSHLMTLTLANQ 152


>SB_59356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +2

Query: 122 KSKNIAQAVKEIHLAKEKGA-QLVALPECFNSPYGTKYFDE----YAEEVPSGETSRALS 286
           K+K   +A +EI   K         +P  +NSPY  K+F +     A   PS +T  A+S
Sbjct: 210 KAKEEQKAAQEIEARKTHYLISTHQIPGVYNSPYDKKHFSKEHALLAVRAPSPKTRAAIS 269


>SB_6308| Best HMM Match : CDC73 (HMM E-Value=5)
          Length = 388

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 194 LPECFNSPYGTKYFDEY 244
           LPE F S Y ++ FDEY
Sbjct: 344 LPEAFQSCYSSQQFDEY 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,601
Number of Sequences: 59808
Number of extensions: 211134
Number of successful extensions: 492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)