Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0399
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protei...    78   2e-15
At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protei...    78   2e-15
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei...    30   0.49 
At2g31100.1 68415.m03798 lipase, putative similar to lipase [Dia...    29   0.85 
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    28   2.0  
At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P329...    27   3.4  
At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P460...    27   4.5  
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca...    26   7.9  
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca...    26   7.9  
At1g17790.1 68414.m02202 DNA-binding bromodomain-containing prot...    26   7.9  

>At5g12040.2 68418.m01407 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 294

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 45/107 (42%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
 Frame = +2

Query: 83  FKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEVPS 262
           F I L QLSV  DK +NI+ A K I  A  KGA+LV LPE +NSPY    F  YAEE+ +
Sbjct: 88  FNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFPVYAEEIDA 147

Query: 263 G----ETSRALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTXE 391
           G     ++  LS+              PER   +LYNTC V+    E
Sbjct: 148 GGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCVFGSDGE 194


>At5g12040.1 68418.m01408 carbon-nitrogen hydrolase family protein
           similar to Nit protein 2 [Homo sapiens] GI:9367116;
           contains Pfam profile PF00795: hydrolase,
           carbon-nitrogen family
          Length = 369

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 45/107 (42%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
 Frame = +2

Query: 83  FKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGTKYFDEYAEEVPS 262
           F I L QLSV  DK +NI+ A K I  A  KGA+LV LPE +NSPY    F  YAEE+ +
Sbjct: 88  FNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFPVYAEEIDA 147

Query: 263 G----ETSRALSKXXXXXXXXXXXXXXPERYEKKLYNTCTVWDDTXE 391
           G     ++  LS+              PER   +LYNTC V+    E
Sbjct: 148 GGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCVFGSDGE 194


>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
           low similarity to beta-alanine synthase [Drosophila
           melanogaster] GI:14334063; contains Pfam profile
           PF00795: hydrolase, carbon-nitrogen family
          Length = 299

 Score = 30.3 bits (65), Expect = 0.49
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 74  KRGFKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPY 220
           +R   ++ +Q +   D S N+A A + +  A  KGA ++ + E F   Y
Sbjct: 7   RREVVVSSLQFACSDDISTNVAAAERLVREAHAKGANIILIQELFEGYY 55


>At2g31100.1 68415.m03798 lipase, putative similar to lipase
           [Dianthus caryophyllus] GI:4103627; contains Pfam
           profile PF01764: Lipase (class 3)
          Length = 355

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   LFLNHFYTLECYIHNGIETSDHVEKRFQDSINSTI 108
           L L HF+ LE Y+H G+  + H +  F+  IN  I
Sbjct: 261 LNLGHFHNLEAYLH-GVAGTQHNQGEFKLEINRDI 294


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 47  TVLRRATMLKRGFKIALIQLSVGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPYGT 226
           TVLRR+ +      +A    S+      N+A A   +         + +LP   +SP+G 
Sbjct: 4   TVLRRSILGTSRRTLAASVTSINAALFHNLAPAAATVSDLANGATNVKSLPSN-SSPFGV 62

Query: 227 KYFDEYAEEVPSGETSRALS 286
           K  D + + VPS   S  +S
Sbjct: 63  KVRDFHVKSVPSEFRSSIVS 82


>At3g44310.1 68416.m04758 nitrilase 1 (NIT1) identical to SP|P32961
           Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 86  KIALIQLS-VGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPY 220
           ++ ++Q S V  D    I +A K I  A  KGA+LV  PE F   Y
Sbjct: 26  RVTIVQSSTVYNDTPATIDKAEKYIVEAASKGAELVLFPEGFIGGY 71


>At3g44320.1 68416.m04760 nitrilase 3 (NIT3) identical to SP|P46010
           Nitrilase 3 (EC 3.5.5.1) {Arabidopsis thaliana}
          Length = 346

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 86  KIALIQLS-VGPDKSKNIAQAVKEIHLAKEKGAQLVALPECFNSPY 220
           ++ ++Q S V  D    + +A K I  A  KGA+LV  PE F   Y
Sbjct: 26  RVTIVQSSTVYNDTPATLDKAEKFIVEAASKGAKLVLFPEAFIGGY 71


>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 759

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4   LFLNHFYTLECYIH-NGIETSDHVEKRFQDSINSTIG 111
           + L+ F+ + C    +G+   D +E+ +QDS+N+  G
Sbjct: 19  ILLSSFHEVSCQDDGSGLSNLDLIERDYQDSVNALQG 55


>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 755

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 4   LFLNHFYTLECYIH-NGIETSDHVEKRFQDSINSTIG 111
           + L+ F+ + C    +G+   D +E+ +QDS+N+  G
Sbjct: 19  ILLSSFHEVSCQDDGSGLSNLDLIERDYQDSVNALQG 55


>At1g17790.1 68414.m02202 DNA-binding bromodomain-containing protein
           similar to SP|P13709 Female sterile homeotic protein
           (Fragile-chorion membrane protein) {Drosophila
           melanogaster}; contains Pfam profile PF00439:
           Bromodomain
          Length = 487

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 266 PPMALPLHIHQNTWFRKES*STPARP 189
           PP+A P+ +   TW R+ES + P  P
Sbjct: 284 PPVAAPV-LENRTWEREESMTIPVEP 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,011,351
Number of Sequences: 28952
Number of extensions: 150805
Number of successful extensions: 336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)