Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0397
(490 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 29 0.38
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 27 1.1
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p... 26 2.7
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 3.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 3.5
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 3.5
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 26 3.5
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 4.6
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 25 4.6
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 25 4.6
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 6.1
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 25 6.1
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 25 6.1
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 6.1
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 6.1
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 6.1
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po... 25 8.1
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 8.1
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 25 8.1
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.38
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 270 RILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETS 407
R++ + +K+++ P T DKT +P D K N+ I+S P TS
Sbjct: 21 RLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANI----ISSVPSTS 62
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 345 PTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVT 461
P + LP+ S I+ D ETS A + + + T +S VT
Sbjct: 273 PKASLLPSTTESSISKDHETSQAPLGSESVDTQASENVT 311
>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 360
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +2
Query: 80 IDVFQIDIEP---EEAQKYLNSPPFTDPQLAGRTAVLP 184
ID+ +D P E AQKY+ + PFT P A LP
Sbjct: 195 IDIVAVDASPSRVEFAQKYVGAKPFT-PIAAKENESLP 231
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 3.5
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +3
Query: 222 KQAPLLDTTGRTERKSRILRTTLKKYTMRP-NTTDKTV*VHM-PTDTKLPNLRRSKIASD 395
K+ L G ++ + + LKK +RP NT+ + + PT+T PNL S+ ++
Sbjct: 124 KRIVTLQNDGGSKNTTARKQKQLKKNGLRPLNTSASRIGLSSSPTNTPSPNLPVSQPSAS 183
Query: 396 PETSPARISTR 428
P S + S +
Sbjct: 184 PHYSGDKNSAK 194
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 305 HRILLQRSPQYSRFPFRSSSSVQEWGLL 222
HR+++Q +P Y R V E+ LL
Sbjct: 2067 HRLIIQMAPDYDRLTLLQKVEVFEYALL 2094
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 3.5
Identities = 19/80 (23%), Positives = 36/80 (45%)
Frame = +2
Query: 230 PTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 409
PT+ + K + Y + Y+ ++ +D + Y + K+ NR++ GDV+
Sbjct: 334 PTIDEMVQEEKLLNKQRKYGQN-YEYAKQIAKDKTYSNNLDYLDENAGKLSNRMKRGDVS 392
Query: 410 GSYIYKDGKNDLIKVRYWSD 469
+ I G DL K+ + D
Sbjct: 393 LAQISSGG--DLKKINHVLD 410
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 226 RPHSWTLLEERKGNREY*GLR*RSIRCVPIPRTRRSRCIC 345
R + WT + KG Y L+ + + P TRR R C
Sbjct: 59 RQNCWTKRNDPKGLTYYQLLKPSEVEILSRPETRRKRMAC 98
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 346 LRIPNSRICEGRKSRQIRRRHRLVYLQGRQKRS 444
L+ PN R +K + RRR R + LQ Q S
Sbjct: 516 LKSPNQRTANAKKRLEERRRRRKLKLQELQLNS 548
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 263 EIENTEDYVEEVYDASQYHGQDGL--GAYAYGYQTPESAK 376
E+ +ED V V + + ++ L G YAYGY+TP + +
Sbjct: 10 ELTTSED-VNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQ 48
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 130 KQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWTLL 249
K P IS + +DQ++ E +S +RP+ W +L
Sbjct: 15 KSPENQSKCISRLRYMVMLDQVESDEGGNSSTRPYVWAVL 54
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 104 EPEEAQKYLNSPPFTDPQLAGRTAVLPLI--KYNDP 205
E E+ YL+S P T P+L +AV I +Y DP
Sbjct: 180 ENEDLAIYLDSSPVTQPELDQSSAVEESISTRYLDP 215
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 6.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = +3
Query: 6 KEETCCVLCLFSPGSELCLRRRNP 77
+++ CC C F LC + NP
Sbjct: 357 QQDACCYQCHFKNAGTLCRQSTNP 380
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 269 ENTEDYVEEVYDASQYHGQDGLGAYAYG 352
++TEDYV ++Y+AS + +AYG
Sbjct: 175 QSTEDYVYDIYEASS--KEPNKPTFAYG 200
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 80 IDVFQIDIEPEEAQKYLNSPPF 145
+D F +++ P+EA KYL S F
Sbjct: 599 VDEFGVELGPKEAYKYLLSHQF 620
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 6.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 292 RSIRCVPIPRTRRSRCICLRIPNSRI---CEGRKSRQIRRRHRLVYLQGRQKRS 444
R + + R+ + +R+PN RI C+G S I+R RL L R+ +S
Sbjct: 836 RILNIIEFTSKRKCMSVIVRMPNGRICLFCKGADSAIIKRL-RLSNLAKRKDKS 888
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = -1
Query: 280 LSILDFLSVLPVVSKSGAC--FNCA 212
L +LDFL P +S+ G C NCA
Sbjct: 36 LRLLDFLEYYPGLSEIGCCNELNCA 60
>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 77 GIDVFQIDIEPEEAQKYLNSPPFTDPQLAGRTAVLPLIK 193
G+ V I + EE + Y N P DP A P+ K
Sbjct: 238 GLPVAHIQLTDEEFKTYKNMPIIFDPDCAYAFPPYPVTK 276
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Frame = +1
Query: 298 IRC-VPIPRTRRSR 336
IRC +PIPRTR SR
Sbjct: 34 IRCDIPIPRTRTSR 47
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 24.6 bits (51), Expect = 8.1
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 281 DYVEEVYDASQYHGQD-GLGAYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLIKVR 457
+YV V + G+ G+G Y + E+ K+ R + V+ + +YK +N +
Sbjct: 291 EYVARVKATHENGGETKGIG-YRAPFSLEETRKLVLRTHTTAVSANMLYKLAQNGFHPAK 349
Query: 458 YWSDRDGFHQE 490
Y+S F E
Sbjct: 350 YFSIDRVFRNE 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,595
Number of Sequences: 5004
Number of extensions: 42819
Number of successful extensions: 144
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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