Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0397
(490 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13) 33 0.096
SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4) 30 0.89
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22) 29 1.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 29 2.1
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 29 2.7
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06) 29 2.7
SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032) 27 6.3
SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24) 27 8.3
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002) 27 8.3
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 27 8.3
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24) 27 8.3
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23) 27 8.3
>SB_57436| Best HMM Match : SCP (HMM E-Value=3.9e-13)
Length = 265
Score = 33.5 bits (73), Expect = 0.096
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = +3
Query: 162 LAAPLSYH*S-----NTTTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDK 326
LA SYH S + T+R + K L +TTG E S T+L + T P TT+
Sbjct: 10 LADGCSYHRSFSSSPDETSRNTSLPKTTSLPETTGLPETTSLPETTSLPETTSLPETTNL 69
Query: 327 TV*VHMPTDTKLPNLRR-SKIASDPETS 407
+P T LP + A+ PET+
Sbjct: 70 PETTSLPETTNLPETTSPPETATPPETT 97
>SB_43247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.9 bits (69), Expect = 0.29
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 155 QLAGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVY 301
QLA + + ++ ++ GP LG + KN + N ED V +VY
Sbjct: 281 QLANISQFMMMLSIQTDEMARLKGGPLLGEFVKNMRGFANAEDGVRKVY 329
>SB_53631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 306 RPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKTISS 449
RP+ T T H P D + P + D +TS R S+ + T+ S
Sbjct: 544 RPSQTPPTSLKHFPGDERTPPTSLKHVPGDEQTSQVRFSSEPSSTLRS 591
>SB_33280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 30.7 bits (66), Expect = 0.67
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +3
Query: 234 LLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLP-NLRRSKIASDPETSP 410
+++TT TE + I TT K T P T +T T T+ P + + ++ T+
Sbjct: 12 IIETTTTTEEPTTITETTTTKTTEEPTTITETT-----TTTEEPTTITETTTTTEEPTTI 66
Query: 411 ARISTRTAKTISSRYVTGQTVTVSTR 488
I+T T + ++ +T T R
Sbjct: 67 TEITTTTEEPTTTTTTAAETPTTIMR 92
>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 275 TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENR 388
TE + + S YHGQDGLG A G + P+ ++++
Sbjct: 151 TEGLTGDFVELSAYHGQDGLGD-AQGLREPDRTPLKDK 187
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 30.3 bits (65), Expect = 0.89
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 240 DTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDPETSPAR 416
+TTG E S T +++ T P TT + +P T P ++ + P T+ A
Sbjct: 2359 ETTGAPETTSAPKTTAVQEATASPETTSEPETTALPKTTAAPETTSPTETTAVPGTTAAP 2418
Query: 417 ISTRTAKTISSRYVTGQTVTVS 482
+T + +T + TG T +
Sbjct: 2419 KTTASPETTAKPDTTGAAETTA 2440
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +3
Query: 222 KQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDP 398
K + DTT E + T + + T P TT K P T P + + P
Sbjct: 1849 KTTVVADTTSVAETAALPKTTAVPETTTPPETTAKPETTGAPETTSAPKTTAVPEATAAP 1908
Query: 399 ETSPARISTRTAKTISSRYVTGQTVTVS 482
ET+ A +T +T S+ T T S
Sbjct: 1909 ETTSAPETTAAPETTSAPETTSVPETTS 1936
Score = 29.1 bits (62), Expect = 2.1
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +3
Query: 228 APLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDPET 404
A + +TT E S T L K T P TT + P T P K + PET
Sbjct: 2127 AAVPETTSVPETTSAPENTALPKTTALPETTAAPETIAKPETTAPPETTALPKTTTLPET 2186
Query: 405 SPARISTRTAKTISSRYVTGQTVTVSTR 488
+ A +T +T + T + T + R
Sbjct: 2187 TAAPETTAKPETTGAPETTSASDTTAVR 2214
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 DTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDPETSPAR 416
+TTG E S T + + T P TT P T P + S PET+
Sbjct: 1885 ETTGAPETTSAPKTTAVPEATAAPETTSAPETTAAPETTSAPETTSVPETTSAPETTALP 1944
Query: 417 ISTRTAKTISSRYVTGQTVT 476
+T + +T + TG T
Sbjct: 1945 ETTASPETTAKPDTTGAPET 1964
>SB_3897| Best HMM Match : DUF1662 (HMM E-Value=4.4)
Length = 300
Score = 30.3 bits (65), Expect = 0.89
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 121 LCFFGLDVNLEDVDAG-FRRRRHNSDPGENRHN 26
LCF + +NLED + G R+R+H + NR N
Sbjct: 266 LCFEAMGMNLEDQNRGRKRKRKHKRNASANRSN 298
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 DTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDPETSPAR 416
+TTG E S T +++ T P TT + +P T P ++ + P T+ A
Sbjct: 2902 ETTGAPETTSAPKTTAVQEATASPETTSEPETTALPKTTAAPETTSPTETTAVPGTTAAP 2961
Query: 417 ISTRTAKTISSRYVTGQTVT 476
+T + +T + TG T
Sbjct: 2962 KTTASPETTAKPDTTGAAET 2981
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 DTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR-SKIASDPETSPAR 416
+TTG E S T + + T P TT P T P + S PET+
Sbjct: 3040 ETTGAPETTSAPKTTAVPEATAAPETTSAPETTAAPETTSAPETTSVPETTSAPETTALP 3099
Query: 417 ISTRTAKTISSRYVTGQTVT 476
+T + +T + TG T
Sbjct: 3100 ETTASPETTAKPDTTGAPET 3119
>SB_12028| Best HMM Match : DAG1 (HMM E-Value=0.22)
Length = 1249
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 345 PTDTKLPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVT 476
PT T L+ ++ +S P TSPA T T + +T TVT
Sbjct: 773 PTATTTSTLQTTEPSSTPSTSPALTVTMTTVIATDSSITPTTVT 816
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/47 (42%), Positives = 21/47 (44%)
Frame = +3
Query: 300 TMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTAKT 440
TM P T P+ T P S I PETSPA IS T KT
Sbjct: 3087 TMAPEATVVPKTTVGPSTTISPKTETS-ITETPETSPATISISTEKT 3132
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 28.7 bits (61), Expect = 2.7
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Frame = +3
Query: 198 TTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRR 377
TT G +AP TTG T T+ P TT PT T P+
Sbjct: 315 TTTGAPSTTRAP--PTTGAVTTTGAPATTGAPATTVAPTTTGAPTTTGAPTTTGAPSTTE 372
Query: 378 SKIASD-PETSPARISTRTAKTISSRYVTGQTVT 476
+ ++ P T+ A +T T + TG T
Sbjct: 373 APSTTEAPSTTEAPSTTEVPTTSAVPTTTGAPTT 406
>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
Length = 587
Score = 28.7 bits (61), Expect = 2.7
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Frame = +3
Query: 189 SNTTTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTT----DKTV*VHMPTDT 356
S TR F + Q P D T T + TT+ YT +TT T+ ++ T T
Sbjct: 365 SGEETRKF-ECVQVPPTDFTTITTITNYTTTTTITNYTTTVSTTITNYTTTITINNYTTT 423
Query: 357 KLPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVST 485
+ + T +T TIS+ Y T T+T++T
Sbjct: 424 VNTTITTNYTTIVTITITTNYTTIVTITISTNYTTIVTITITT 466
>SB_59548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2835
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -2
Query: 450 LMRSFLPSL*IYEPVTSPDLTRFSTF----ADSGVWYP*AYAPRPSCPWYWD 307
L R+FLP +Y + +PDLT+ T D + Y + C WYWD
Sbjct: 1550 LRRTFLPYQGLYYVLITPDLTKQQTLLWRSGDLNISYGLGFY-ESGC-WYWD 1599
>SB_8469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 218 VEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTP 364
VEAG L + + + + +VE AS+ G++GL A A G TP
Sbjct: 229 VEAGRRLAKWNRQNRAKKKAVQHVESPV-ASESQGREGLRARAEGIHTP 276
>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
Length = 807
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 130 KQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWT 243
KQ +HR P RCL+ID I + S P S T
Sbjct: 455 KQVPVHRYHSPRPSRCLSIDTILHDQAGACPSIPFSTT 492
>SB_49779| Best HMM Match : TPR_2 (HMM E-Value=0.24)
Length = 563
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 267 SRILRTTLKKYTMRPNTT--DKTV*VHMPTDTKLPNLRRSKIASDPETSPARISTRTA 434
+R LRT + + TT + H+ T T PN RSK +++P+R STR +
Sbjct: 425 ARPLRTPTRSSLLASFTTMPHSSASFHI-TSTPFPNGYRSKTRCGAQSAPSRCSTRVS 481
>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
Length = 765
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +1
Query: 130 KQPTIHRSSISWPHRCLTIDQIQRPEVSHS*SRPHSWT 243
K P +HR P CL+ID I + S P S T
Sbjct: 510 KHPPVHRYHSPRPSTCLSIDTILHDQARACSSPPFSMT 547
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 218 VEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAYAYGYQTP 364
VEAG L + + + +N +VE AS+ G++GL A G TP
Sbjct: 1098 VEAGRRLAKWNRLNRAKKNAVQHVESPV-ASESQGREGLRPRAEGIHTP 1145
>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
Length = 1058
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 227 GPTLGHYWKNGKEIENTEDYVEEV 298
GP L H W+ G E +N E+ V+ V
Sbjct: 723 GPRLRHVWRGGGEEKNQENCVKYV 746
>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
Length = 1250
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 292 FNVVLSILDFLSVLPVVSKSGACFNCAKPRVVVFD 188
F + + D V+ VS +G FN +KP VVF+
Sbjct: 1002 FTFSIQVTDDGRVVTDVSPNGLTFNVSKPNTVVFN 1036
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,562
Number of Sequences: 59808
Number of extensions: 347890
Number of successful extensions: 1249
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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