Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0397
(490 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidan... 33 0.15
AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical... 30 1.0
AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math... 30 1.0
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 29 1.8
U00031-5|AAP68960.1| 534|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 28 4.2
L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical pr... 28 4.2
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co... 27 5.5
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ... 27 5.5
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 27 7.3
U28412-3|AAC46594.2| 92|Caenorhabditis elegans Hypothetical pr... 27 7.3
AC006642-7|AAF39828.1| 154|Caenorhabditis elegans Hypothetical ... 27 7.3
Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical pr... 27 9.7
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 9.7
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 27 9.7
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 9.7
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 9.7
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 27 9.7
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 9.7
>U00037-6|AAA50658.1| 419|Caenorhabditis elegans Osmotic avoidance
abnormal protein10 protein.
Length = 419
Score = 32.7 bits (71), Expect = 0.15
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = +3
Query: 222 KQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNLRRSKIASDPE 401
K+ LLD + +KS ++ TT KK + K + +P+ AS P+
Sbjct: 11 KKTSLLDPS---PKKSSVIETTTKKTS---GIESKLLPNELPSTGTTGTSGVKNGASSPK 64
Query: 402 TSPARISTRTAKTISSRYVTGQTVTVST 485
TSPA+ +T T ++ + T +ST
Sbjct: 65 TSPAKTTTTTTTVVTQKVSNQPTAPIST 92
>AF106577-10|AAC78189.1| 796|Caenorhabditis elegans Hypothetical
protein F46F5.11 protein.
Length = 796
Score = 29.9 bits (64), Expect = 1.0
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +2
Query: 224 AGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDG-LGAYAYGYQ-TPESAK-VENRVR 394
+G T+ N + N +Y+++ D Q + G + Y + ++ +PE++K +EN +
Sbjct: 303 SGLTVSFVPTNAVQFRNAHNYLKDFKDEKQVYEDSGRMIDYLHNWKCSPENSKQIENCI- 361
Query: 395 SGDVTGSYIYKDGKNDLIKVRYWSDRD 475
K NDL+KV+ W ++D
Sbjct: 362 ----------KQLVNDLVKVKLWGEQD 378
>AC006648-10|AAF39859.1| 305|Caenorhabditis elegans Btb and math
domain containingprotein 5 protein.
Length = 305
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +2
Query: 233 TLGHYWKNGKEIEN-------TEDYVEEVYDASQYHGQDGLGAYAYGYQTPESA 373
TL H +KN ++E+ ED+ ++ S H ++ LG Y Y Y++ ESA
Sbjct: 9 TLRHIFKNVSQLEDGKYLYSPDEDHFNVDWNMSISHKKEKLGVYFYCYKSEESA 62
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 29.1 bits (62), Expect = 1.8
Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Frame = +3
Query: 192 NTTTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKLPNL 371
+TTT L LL T T S T + P+TT T T + +
Sbjct: 287 STTTSSSTMLSSTTLLTTETETRESSSTGSTQTTTPSTEPSTTITTPMEQSSTVSSVQKT 346
Query: 372 RRSK-IASDPETSPARISTRTAKTISSRYVTGQTVTVS 482
R S+ S T P ST + T S T + T S
Sbjct: 347 RTSEDKPSSSTTVPTSASTSESSTSSPMAETSSSSTTS 384
>U00031-5|AAP68960.1| 534|Caenorhabditis elegans Hypothetical
protein B0361.11 protein.
Length = 534
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Frame = +3
Query: 345 PTDTK-LPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVS 482
P++T L RRSK +S ++ ++ S R+ KT+SS V+ + TV+
Sbjct: 480 PSETNDLSAYRRSKSSSSSVSALSKTSVRSKKTLSSESVSKKLDTVN 526
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 298 IRCVPIPRTRRSRCICLRIPNSRI 369
+RC+ R RRSR +C+ + R+
Sbjct: 104 VRCLKASRRRRSRRVCIEVEEDRV 127
>L14433-1|AAA27979.1| 398|Caenorhabditis elegans Hypothetical
protein C50C3.7 protein.
Length = 398
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/66 (27%), Positives = 25/66 (37%)
Frame = +2
Query: 164 GRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEIENTEDYVEEVYDASQYHGQDGLGAY 343
GR ++ IK D RF+ G GH G ++ Y D+ HG + G
Sbjct: 88 GRKQLIGQIKRIDYRFQRNTMGGLTGHKGSIGVRLQLASPYSIVFVDSHFIHGPENYGKR 147
Query: 344 AYGYQT 361
Y T
Sbjct: 148 VEQYHT 153
>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
protein protein7 protein.
Length = 1217
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 354 TKLPNLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVTVST 485
T+LP + + +P T+ A +ST TA+ + + + + ST
Sbjct: 906 TELPKISSTLSFGNPTTAAAPVSTATAEAVKTNVFGSNSASAST 949
>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
protein F54C4.3 protein.
Length = 1145
Score = 27.5 bits (58), Expect = 5.5
Identities = 24/102 (23%), Positives = 40/102 (39%)
Frame = +2
Query: 89 FQIDIEPEEAQKYLNSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKNGKEI 268
F +E EE ++ + PF +PQ ++ Y+D V +GH E+
Sbjct: 756 FYTTVEDEEGEEAEHENPFKNPQ---------ILMYDDDGDEVVVEEEIIGHEIDGASEL 806
Query: 269 ENTEDYVEEVYDASQYHGQDGLGAYAYGYQTPESAKVENRVR 394
+ +E EEV Y + Y Y E K+ + +R
Sbjct: 807 QGSELPDEEVI----YETYEDYPEYGGHYDLEEEHKMHHNMR 844
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.1 bits (57), Expect = 7.3
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Frame = +3
Query: 195 TTTRGFAQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTKL---P 365
TTT Q+ +T + +K TT K + +P TT V + T TK P
Sbjct: 368 TTTEVIRQVTTTTKKPSTTTSTKKLTTTTTTTPKPSQKPTTTTTKSPVVITTTTKTSPKP 427
Query: 366 NLRRSKIASDPETSPARISTRTAKTISSRYVTGQTVT 476
S S ++ ST T K + R T + T
Sbjct: 428 TTSPSTTTSTTTSTTIPPSTTTRKPANPRRSTIMSAT 464
>U28412-3|AAC46594.2| 92|Caenorhabditis elegans Hypothetical
protein T19C3.3 protein.
Length = 92
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 375 RSKIASDPETSPARISTRTAKTISSRYVTGQ 467
+S+I D SP+R RT + +S VTG+
Sbjct: 50 KSQIFDDVPASPSRTPKRTVQVVSRNPVTGE 80
>AC006642-7|AAF39828.1| 154|Caenorhabditis elegans Hypothetical
protein F49H12.2 protein.
Length = 154
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +3
Query: 213 AQLKQAPLLDTTGRTERKSRILRTTLKKYTMRPNTTDKTV*VHMPTDTK--LPNLRRSKI 386
A+ + P + G E + R L+K R N +T +H P+DT+ + N +
Sbjct: 25 AEPTKKPKVVWPGEFENQLRKRNRNLEKIDERENNRLETPAIHTPSDTQSLISNEEDAHS 84
Query: 387 ASD--PETSP 410
SD PET P
Sbjct: 85 TSDLKPETPP 94
>Z92784-7|CAE54895.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 EIENTEDYVEEVYDAS-QYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 409
E+E ED ++ +A Q +G + + + +TP S+ EN++ +G T
Sbjct: 365 ELEELEDDDIQIIEAGDQGNGVEEVSSTVISVETPNSSSDENKIYNGHQT 414
>Z92784-6|CAB07197.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 EIENTEDYVEEVYDAS-QYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 409
E+E ED ++ +A Q +G + + + +TP S+ EN++ +G T
Sbjct: 362 ELEELEDDDIQIIEAGDQGNGVEEVSSTVISVETPNSSSDENKIYNGHQT 411
>Z81526-9|CAE54892.1| 808|Caenorhabditis elegans Hypothetical
protein F31C3.2b protein.
Length = 808
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 EIENTEDYVEEVYDAS-QYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 409
E+E ED ++ +A Q +G + + + +TP S+ EN++ +G T
Sbjct: 365 ELEELEDDDIQIIEAGDQGNGVEEVSSTVISVETPNSSSDENKIYNGHQT 414
>Z81526-8|CAB04268.1| 805|Caenorhabditis elegans Hypothetical
protein F31C3.2a protein.
Length = 805
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 EIENTEDYVEEVYDAS-QYHGQDGLGAYAYGYQTPESAKVENRVRSGDVT 409
E+E ED ++ +A Q +G + + + +TP S+ EN++ +G T
Sbjct: 362 ELEELEDDDIQIIEAGDQGNGVEEVSSTVISVETPNSSSDENKIYNGHQT 411
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 288 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 374
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 288 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 374
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 288 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 374
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 288 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 374
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 288 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 374
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 288 LKKYTMRPNTTDKTV*VHMPTDTKLPNLR 374
L KY +R +TTD+ V P + LP+ R
Sbjct: 398 LDKYNIRQHTTDEDTIVLQPQEPGLPSFR 426
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,755
Number of Sequences: 27780
Number of extensions: 251383
Number of successful extensions: 831
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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