Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0397
         (490 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta...    29   2.2  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    28   3.9  
At2g26410.1 68415.m03169 calmodulin-binding family protein simil...    28   3.9  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    28   3.9  
At5g45190.1 68418.m05547 cyclin family protein similar to cyclin...    27   5.1  
At5g15730.1 68418.m01840 serine/threonine protein kinase, putati...    27   5.1  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    27   6.8  
At1g13710.1 68414.m01611 cytochrome P450 family protein similar ...    27   6.8  
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    27   9.0  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    27   9.0  
At2g15670.1 68415.m01794 hypothetical protein                          27   9.0  

>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam PF00226: DnaJ
           domain; similar to dnaJ (GI:144832) [Clostridium
           acetobutylicum]
          Length = 207

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 243 CPRVGPASTVRNLGSLYLINGKTAVR 166
           CP  G  S + N+ S  +ING+T +R
Sbjct: 104 CPNCGQNSAMTNISSTEVINGRTFIR 129


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 338 AYAYGYQTPESAKVENRVRSGDVTGSYIYKDGKNDLI--KVRYWSDRD 475
           +Y  G +T  +++V  ++  G+    Y++ DG+N +I   +  WS R+
Sbjct: 494 SYGVGGKTVITSRVYPKLAIGEAAKLYVFNDGENGVIMTSLEAWSMRN 541


>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 516

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 379 RKSRQIRRRHRLVYLQGRQKRSHQ 450
           R S + + RHRL+  +G QK +HQ
Sbjct: 201 RLSAENKTRHRLIQQKGHQKENHQ 224


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 83  DVFQIDIEPEEAQKYLNSPPFT---DPQLAGRTAVLPLIKYNDPRFRTVEAG 229
           D   I I    A    NS PFT   +P+ +    V+PL KYN   +  V  G
Sbjct: 242 DSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLG 293


>At5g45190.1 68418.m05547 cyclin family protein similar to cyclin T1
           [Equus caballus] GI:5052355; contains Pfam profile
           PF00134: Cyclin, N-terminal domain
          Length = 579

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 67  RRRHNSDPGENRHNTQHVSS 8
           +RRHNS+ GE  H T   SS
Sbjct: 543 KRRHNSENGEESHKTSRGSS 562


>At5g15730.1 68418.m01840 serine/threonine protein kinase, putative
           similar to protein-serine/threonine kinase [Nicotiana
           tabacum] gi|505146|dbj|BAA06538
          Length = 434

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 374 SQIREFGIRRHMHLDRLVRGI-GTHRILLQRSPQY-SRFPFRSSSSVQEWGLLQL 216
           +++ +FG+ + M LDR+  G+ GTH  +    P Y S   +   S +  +G++ L
Sbjct: 251 AKVADFGLSKEMVLDRMTSGLKGTHGYM---DPTYISTNKYTMKSDIYSFGVIIL 302


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
           SP|P14713 Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 248 SSVQEWGLLQLCETSGRCI*SMVRQRCGQLIE 153
           SS++ WGL+    TS RCI   +R  C  L++
Sbjct: 392 SSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQ 423


>At1g13710.1 68414.m01611 cytochrome P450 family protein similar to
           cytochrome P450 78A1 (SP:P48420) GI:349717 from [Zea
           mays]
          Length = 517

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +2

Query: 77  GIDVFQIDIEPEEAQKYLNSPPFTDPQLAGRTAVLPLIKYNDPRFRTVEAGPTLGHYWKN 256
           G   F I  EPE A++ L+S  F D  +  + +   L+ +     R +   P  G YW+N
Sbjct: 91  GFSRFVISSEPETAKEILSSSAFADRPV--KESAYELLFH-----RAMGFAP-YGEYWRN 142

Query: 257 GKEIENT 277
            + I +T
Sbjct: 143 LRRISST 149


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 299 YDASQYH--GQDGLGAYAYGYQTP 364
           Y ++ Y+  G  G GAYAYGY  P
Sbjct: 77  YQSAAYNAKGSYGKGAYAYGYYPP 100


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +2

Query: 299 YDASQYH--GQDGLGAYAYGYQTP 364
           Y ++ Y+  G  G GAYAYGY  P
Sbjct: 79  YQSAAYNAKGSYGKGAYAYGYYPP 102


>At2g15670.1 68415.m01794 hypothetical protein
          Length = 193

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 195 TTTRGFAQLKQAPLLDTTGRTERKSRILRT 284
           T+ R +++ +   +++  G TER +R+L+T
Sbjct: 45  TSKRKYSKFQDISVIEQVGNTERHARVLKT 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,092,534
Number of Sequences: 28952
Number of extensions: 237935
Number of successful extensions: 760
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)