Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0395
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 0.48
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 1.5
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 27 1.5
SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2 ... 27 1.9
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 26 3.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.4
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.5
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 25 7.8
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 29.1 bits (62), Expect = 0.48
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 55 EKTATKLLDLSKSKYDFVNKEKPLLTIDEVLNSPKRKTLVRQDMTVQ 195
+ T+T S DF+ EKP I EVL KRK + + TV+
Sbjct: 628 KSTSTSKTKFDTSIVDFI--EKPKTEISEVLPEEKRKAICDESQTVR 672
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.5 bits (58), Expect = 1.5
Identities = 21/72 (29%), Positives = 32/72 (44%)
Frame = +1
Query: 166 TLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMETQTSVATPTEDGLEIYSSTQWLD 345
+L+ + VQP + STV ++I QY+ E ++ D LEIY S
Sbjct: 106 SLLLSNSNVQPFVNKFYTSTVFPSFLQILKQYNVAQEEFFAILCVVCDSLEIYHSNLSTL 165
Query: 346 LTNIAIAKCLDM 381
L N C+D+
Sbjct: 166 LPN-NFELCIDV 176
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 249 NFHRAFNYSAYIGS*VSWLNCHILPYESFPFGGIED 142
N A S + + W+NC+ L + PFGG ++
Sbjct: 437 NITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKE 472
>SPBC2G2.15c |||mitochondrial 2' O-ribose methyltransferase Mrm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 52 REKTATKLLDLSKSKYDFVNKEKPLLTI 135
R + A KL++L+ SKY F+NKE ++ +
Sbjct: 29 RSRAAYKLIELN-SKYRFINKEDVVIDV 55
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 43 VADREKTATKLLDLSKSKYDFVNK--EKPLLTIDEVLNSPKRKTLVRQDMT 189
+ D+ + + S+SKYDF+ K E P+ I+E + S R + D T
Sbjct: 331 IDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGT 381
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.4
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 106 VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 279
VN P+ T VLNS P + V T + + + ST I S +++ T T
Sbjct: 2742 VNTSTPI-TSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSST 2800
Query: 280 QTSVATPTEDGLEIYSST 333
+ +TP + SST
Sbjct: 2801 VVNTSTPITSSTVVNSST 2818
Score = 25.8 bits (54), Expect = 4.5
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 106 VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 279
VN P+ T VLNS P + V T + + + ST I S +++ T T
Sbjct: 2226 VNSSTPI-TSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSST 2284
Query: 280 QTSVATPTEDGLEIYSST 333
+ +TP + SST
Sbjct: 2285 VVNTSTPITSSTVVNSST 2302
Score = 25.4 bits (53), Expect = 5.9
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 106 VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 279
+N P+ T VLN+ P + V T + + + ST I S +++ T T
Sbjct: 990 LNSSTPI-TSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSST 1048
Query: 280 QTSVATPTEDGLEIYSST 333
+ +TP + SST
Sbjct: 1049 VVNTSTPITSSTVVNSST 1066
Score = 25.4 bits (53), Expect = 5.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 106 VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 279
+N P+ T VLNS P + V T + + + ST I S +++ T T
Sbjct: 1098 LNSSTPI-TSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSST 1156
Query: 280 QTSVATPTEDGLEIYSST 333
+ +TP + SST
Sbjct: 1157 VVNTSTPITSSTVVNSST 1174
Score = 25.4 bits (53), Expect = 5.9
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 106 VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 279
VN P+ T VLNS P + V T + + + ST I S +++ T T
Sbjct: 2334 VNTSTPI-TSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSST 2392
Query: 280 QTSVATPTEDGLEIYSST 333
+ +TP + SST
Sbjct: 2393 VVNTSTPITSSSVLNSST 2410
Score = 25.0 bits (52), Expect = 7.8
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +1
Query: 106 VNKEKPLLTIDEVLNS--PKRKTLVRQDMTVQPTDSGSDISTVIEGSMKIHAQYHYTMET 279
VN P+ T V+NS P + V T + + + ST I S +++ T T
Sbjct: 834 VNTSTPI-TSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSST 892
Query: 280 QTSVATPTEDGLEIYSST 333
+ +TP + SST
Sbjct: 893 VVNTSTPITSSTVVNSST 910
>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 185
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 234 FNYSAYIGS*VSWLNCHILPYESFPFGGIEDFVNGQ*GFFFVDK 103
F ++A +G +S L C + +++ GIE + G G FF K
Sbjct: 23 FIFAAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFFAWK 66
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 7.8
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 6/130 (4%)
Frame = +1
Query: 55 EKTATKLLDLSKSKYDFVN-KEKPLLTIDEVLNSPKRKTLVRQDMTVQPTDSGSDISTVI 231
EKT K D+ + VN K +PL+ EV K+K ++++ +
Sbjct: 111 EKTMAK--DIKSFPFHIVNDKNRPLV---EVNVGGKKKKFTPEEISAMILSKMKQTAEAY 165
Query: 232 EGSMKIHA-----QYHYTMETQTSVATPTEDGLEIYSSTQWLDLTNIAIAKCLDMPVNSI 396
G HA Y + Q + T GL + + T AIA LD
Sbjct: 166 LGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVN--EPTAAAIAYGLDKTDTEK 223
Query: 397 NIIVRRLGGG 426
+I+V LGGG
Sbjct: 224 HIVVYDLGGG 233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,211
Number of Sequences: 5004
Number of extensions: 48452
Number of successful extensions: 161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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