Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0392
(536 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 135 3e-33
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 135 3e-33
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 135 3e-33
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 135 3e-33
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 135 3e-33
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 77 1e-15
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 2e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 42 6e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 39 5e-04
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 27 1.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 3.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 7.2
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 9.5
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 9.5
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 bits (254), Expect = 2e-24
Identities = 47/62 (75%), Positives = 50/62 (80%)
Frame = +1
Query: 229 RKNPHFTVVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNL 408
+K +VLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN L
Sbjct: 62 QKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQL 121
Query: 409 RP 414
RP
Sbjct: 122 RP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 bits (254), Expect = 2e-24
Identities = 47/62 (75%), Positives = 50/62 (80%)
Frame = +1
Query: 229 RKNPHFTVVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNNL 408
+K +VLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN L
Sbjct: 62 QKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQL 121
Query: 409 RP 414
RP
Sbjct: 122 RP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 137 IQKESTLH 144
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 213 IQKESTLH 220
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 289 IQKESTLH 296
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 365 IQKESTLH 372
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 135 bits (327), Expect = 3e-33
Identities = 64/68 (94%), Positives = 68/68 (100%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
MQIFVKTLTGKTITLEVE+S+TI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 225 IQKESTLH 248
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 77.4 bits (182), Expect = 1e-15
Identities = 32/68 (47%), Positives = 49/68 (72%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
M I VKTLTGK I L+++ ++ + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 225 IQKESTLH 248
++ S LH
Sbjct: 61 LEGGSVLH 68
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 43.6 bits (98), Expect = 2e-05
Identities = 18/54 (33%), Positives = 35/54 (64%)
Frame = +3
Query: 75 KTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 236
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 41.9 bits (94), Expect = 6e-05
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 72 GKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 245
GK LE+E +ET +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 38.7 bits (86), Expect = 5e-04
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +3
Query: 45 MQIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 224
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 225 IQKESTLH 248
IQ ++H
Sbjct: 64 IQDGHSIH 71
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 1.8
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Frame = +3
Query: 66 LTGKTITLEVEASETIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 236
L G T EV +T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 237 STLHRGFE 260
LH F+
Sbjct: 154 QVLHPQFQ 161
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 125 FDIFDSLGSFHLQCNGLPRKGFDEYLH 45
F ++SLG + L C + FDEYL+
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY 2913
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 48 QIFVKTLTGKTITLEVEASETIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 218
+I V T+ K +V ++T+ +K I P D+ +LI AG+ L + L +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -2
Query: 130 LALTFSIVSEASTSNVMVFPVRVLTNICIVLLL 32
L TF++ STS++++ R L N+ I++++
Sbjct: 4 LDYTFNVSDATSTSSIIIVSRRELANLRIMVII 36
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 155 RNTFLVLDFSFDIFDSLGSFH 93
R+T+ VL F +FD L FH
Sbjct: 512 RSTYKVLKNDFQVFDLLNFFH 532
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,706
Number of Sequences: 5004
Number of extensions: 45478
Number of successful extensions: 139
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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