Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0392
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.86 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = -3

Query: 438 YLILDLLFGSQIVSV----SALC--LATVGSTRMKTGIAFTANHFLTVILHGENAKGRFN 277
           +L+   LFG Q +++    +AL   +   G   + +G   +  ++ T+I   +   G  N
Sbjct: 7   WLLSICLFGLQEIAIQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHDELPGHIN 66

Query: 276 CTSSK 262
           C SSK
Sbjct: 67  CDSSK 71


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 149 YSSRPTTSHLCRETIRRWPHS 211
           +SS P  +H CR     W HS
Sbjct: 173 FSSWPYDTHRCRINFGSWVHS 193


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 330 NHFLTVILHGENAKGRFNCTSSKSQNHGEVWILSGCYSLK 211
           N F+ ++ HG   +G+     +K   H  V +    YS K
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLLYSAK 117


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 330 NHFLTVILHGENAKGRFNCTSSKSQNHGEVWILSGCYSLK 211
           N F+ ++ HG   +G+     +K   H  V +    YS K
Sbjct: 78  NEFMQLLKHGMLPRGQVFTMMNKEMRHQAVVLFRLLYSAK 117


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 71  GEDHYIGGGSFRDYRKCQS 127
           GED +  GG+ RD  K  S
Sbjct: 192 GEDEFANGGAARDESKAGS 210


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 304 WRECEGKVQLYLL 266
           W++CEGK+  YL+
Sbjct: 200 WKQCEGKID-YLV 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,111
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)