Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0391
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    30   0.29 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    29   0.67 
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.2  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   2.7  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    26   3.5  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   6.2  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   6.2  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   6.2  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.2  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 49   MNGLTRFRSVPIYYLAKPQPRGTGLVRISGGKKTLLSLTLVWAL 180
            ++ L  F    ++ +  P+     +  +SGG+KTL SL LV+AL
Sbjct: 1203 VDSLDPFSEGVLFSVMPPKKSWKNISNLSGGEKTLSSLALVFAL 1246


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 84  LLSSETTAKGNGLGENQRGKEDPVEL---DSSLGI 179
           LLSS     GNGLGE Q G+   +++   D +LGI
Sbjct: 32  LLSSYGWVNGNGLGEKQHGRIHNIKVSLKDDTLGI 66


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 434 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 568
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -3

Query: 586 LYTKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNS 416
           L+  GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184

Query: 415 PPGSVLE 395
           PP SV+E
Sbjct: 185 PPASVIE 191


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +1

Query: 85   YYLAKPQPRGTGLVRISGGKKTLLSLTLVWAL 180
            ++   P  R   + ++SGG+KT+ +L L++A+
Sbjct: 1117 FHAMPPMKRFRDMDQLSGGEKTMAALALLFAI 1148


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 551  SPYAY*TSGSSQLLPFCSTRGF 486
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 443 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 294
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/18 (50%), Positives = 17/18 (94%)
 Frame = +1

Query: 127  RISGGKKTLLSLTLVWAL 180
            ++SGG+K+L +LTL++A+
Sbjct: 1096 QLSGGQKSLCALTLIFAI 1113


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -2

Query: 239 FSDDRAKRS---PTYATPLMSPYNAQTRVKLNR 150
           + DDR + S   PT+  PL+ PY     V   R
Sbjct: 51  YYDDRTRASGPYPTFTKPLIDPYTQTNAVSYER 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,328
Number of Sequences: 5004
Number of extensions: 52624
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)