Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0391
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.39
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 31 0.68
01_01_0361 + 2838979-2841745,2841897-2842285 30 1.2
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 2.7
02_05_0446 - 29091389-29091559,29091722-29091774,29091945-290923... 29 2.7
11_03_0049 - 9318578-9319312 29 3.6
06_03_1448 + 30235336-30236763 29 3.6
06_03_1443 + 30182018-30183445 29 3.6
06_03_1440 + 30166515-30167942 29 3.6
06_03_1437 + 30151030-30152457 29 3.6
06_03_1429 + 30100834-30102261 29 3.6
06_03_1425 + 30084383-30085810 29 3.6
06_03_1420 - 30053713-30055140 29 3.6
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 3.6
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 3.6
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 4.8
08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692 28 6.3
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 6.3
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 8.4
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 27 8.4
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 27 8.4
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 8.4
01_06_1661 - 38972368-38972391,38972822-38973490 27 8.4
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 27 8.4
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 413 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 291
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 31.1 bits (67), Expect = 0.68
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 49 MNGLTRFRSVPIYYLAKPQPRGTGLVRISGGKKTLLSLTLVWAL 180
++ L F ++ + P+ + +SGG+KTL SL LV+AL
Sbjct: 1198 VDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFAL 1241
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 72 ECPYLLSSETTAKGNGLGENQRGKEDPVELDSSLGIVRRHERCSISGRSFRA-IVAEKPL 248
E P LSS + K GL NQ G PVEL ++L + ++ + SF I A
Sbjct: 139 ELPANLSSCISMKNLGLAFNQLGGRIPVELGNTL---TQLQKLQLQNNSFTGPIPASLAN 195
Query: 249 LSLFHYL 269
LSL YL
Sbjct: 196 LSLLQYL 202
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 313 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 492
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 493 RVEQKGK 513
RV+ G+
Sbjct: 114 RVDNGGR 120
>02_05_0446 -
29091389-29091559,29091722-29091774,29091945-29092373,
29093411-29094191
Length = 477
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -1
Query: 288 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQCPD*SQAQQGLLSP-ADSHQARS 112
PLP + + + + V V R +T S Y + S PD + G SP +H+ R
Sbjct: 33 PLPQEKAAEKPIPVPVAPVRRAQTASATLYATPESTSLPDSPSSFPGTWSPYLINHKRRG 92
Query: 111 PWL 103
P L
Sbjct: 93 PCL 95
>11_03_0049 - 9318578-9319312
Length = 244
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 102 TAKGNGLGENQRGKEDPVELDSSLGIVRRHERCSISG 212
T G+G GEN R ++ EL+ L VR H R S G
Sbjct: 16 TLGGHGGGENYRTEQFIAELEQKLKEVRGHARPSSKG 52
>06_03_1448 + 30235336-30236763
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 418 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 281
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1443 + 30182018-30183445
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 418 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 281
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1440 + 30166515-30167942
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 418 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 281
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1437 + 30151030-30152457
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 418 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 281
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1429 + 30100834-30102261
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 418 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 281
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1425 + 30084383-30085810
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 418 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 281
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_03_1420 - 30053713-30055140
Length = 475
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 418 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYRPRTAS 281
+PP L +L+ GD+R+ V LH W+E R YR +S
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYRSSCSS 171
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 346 TTLHAWNETPCARRYY 299
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 354 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 443
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 433 PPQSNSPPGSVLEPDHAGVLNGDE 362
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>08_02_1371 + 26493981-26494471,26497374-26497504,26497947-26498692
Length = 455
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 277 GRKRCAVD-NIGGRTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNN 453
GR+ C+VD +GG F GG A+ R+ + +P +G A + TGA + ++
Sbjct: 48 GRQECSVDLKLGGLGEFG--------GGGAQPRVAVAGEPAKGKGPAAAATGAA-AAASS 98
Query: 454 AGVLRP 471
A RP
Sbjct: 99 APAKRP 104
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 310 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 432
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 428 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 306
P++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +3
Query: 108 KGNGLGENQRGKEDPVEL---DSSLGIVRRHE 194
KG GLG+N++G +P++ D+ LG+ ++ +
Sbjct: 75 KGKGLGKNEQGITEPIKAGIRDAKLGVGKQEQ 106
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 397 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 522
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 469 ALGHLRYSLTDVPPQSNSPPGSVLEP 392
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
>01_06_1661 - 38972368-38972391,38972822-38973490
Length = 230
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 73 SVPIYYLAKPQPRGTGLVRISGGKKTLL--SLTLVWAL*GDMRGVA*VGDR 219
+ P+ Y+A P PRG VR GG L+ S+ W + +RGV V R
Sbjct: 12 ATPVRYVALPPPRG---VRDGGGWNVLVPESMASEWTV-AHVRGVVRVASR 58
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 103 QPRGTGLVRISGGKKTLLSLTLVWAL*GDMRGVA*VGDRFARSSLKNH 246
+P G V SGG + T+ G G+A GD F S+L +H
Sbjct: 183 RPGSVGFVSKSGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDH 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,825,306
Number of Sequences: 37544
Number of extensions: 420647
Number of successful extensions: 1286
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1286
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -