Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0391
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.96 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.96 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    24   1.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    24   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
 Frame = -1

Query: 237 QRRSRETISHLCYTSHVSLQCPD*SQAQQGLLSPA-------DSHQARSPWLWFR*IVDR 79
           Q  + E++  LC T H    CP+  +A +G+   A       DS + +  W +   ++DR
Sbjct: 456 QLPTEESVDALCNTLHHWHHCPEIYKAIEGIRFIADHTKREEDSTRVKEDWKYVAMVLDR 515


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -3

Query: 511 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRHVTTLH 335
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R  ++++
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 334 AWNETPCARRYYRPRTASA 278
            +     A  +++ + A A
Sbjct: 90  PYVSAAAAHHHHQQQQAVA 108


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 148 TLLSLTLVWAL*GDMRGVA*VGDRFARSSLKNHYFHCFI 264
           +LL+ T    L  D      + +  A   L+N Y+ CFI
Sbjct: 12  SLLTWTYAEELYSDKYDYVNIDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 148 TLLSLTLVWAL*GDMRGVA*VGDRFARSSLKNHYFHCFI 264
           +LL+ T    L  D      + +  A   L+N Y+ CFI
Sbjct: 12  SLLTWTYAEELYSDKYDYVNIDEILANDRLRNQYYDCFI 50


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 229 SSLKNHYFHCFITYSVGRK 285
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,636
Number of Sequences: 438
Number of extensions: 3743
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)