Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0391
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 34 0.081
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 31 0.57
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.57
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 2.3
At3g51270.1 68416.m05612 RIO1 family protein contains Pfam profi... 29 3.0
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 3.0
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 5.3
At3g62370.1 68416.m07006 expressed protein 28 5.3
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 5.3
At5g49460.1 68418.m06119 ATP-citrate synthase, putative / ATP-ci... 27 7.0
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 7.0
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 7.0
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 7.0
At3g06650.1 68416.m00774 ATP-citrate synthase, putative / ATP-ci... 27 7.0
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 27 7.0
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 27 7.0
At4g39070.1 68417.m05533 zinc finger (B-box type) family protein... 27 9.3
At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine... 27 9.3
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 27 9.3
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 33.9 bits (74), Expect = 0.081
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +3
Query: 12 GSQMPRHLISDAHEWINEIPECPYLLSSETTAKGNGLGENQRGKEDPVELDSSLGIVRRH 191
G +P + +SD + INE+ P +++ E T K NGL +N GK D + +R
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTPQVIAKE-TVKENGLQKN-GGKRDEFSKEEGDKDRKRA 127
Query: 192 ERCS 203
CS
Sbjct: 128 RVCS 131
>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
family protein similar to SP|P50532 Chromosome assembly
protein XCAP-C {Xenopus laevis}; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 31.1 bits (67), Expect = 0.57
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 49 MNGLTRFRSVPIYYLAKPQPRGTGLVRISGGKKTLLSLTLVWAL 180
++ L F ++ + P+ + +SGG+KTL SL LV+AL
Sbjct: 1115 VDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFAL 1158
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.57
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 333 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 187
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 473 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 586
LS R W RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At3g51270.1 68416.m05612 RIO1 family protein contains Pfam profile
PF01163: RIO1 family
Length = 472
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 90 SSETTAKGNGLGENQRGKEDPVELDSSLGIVRRHERCSISGR 215
+ E+ + +G N+ +E EL+ +LG VRR + GR
Sbjct: 402 NGESNGDEDEVGSNEEEEEKEAELEKNLGKVRRRAMAAARGR 443
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 436 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 320
+P SNS P +VL + A + GD H TT+H W+ET
Sbjct: 5 LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 297 DRAPLPPNRVSNETMKVVVFQRRSRET 217
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 421 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 326
N+ PG + P G NG +RF H+ ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 5.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 348 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 211
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g49460.1 68418.m06119 ATP-citrate synthase, putative /
ATP-citrate (pro-S-)-lyase, putative / citrate cleavage
enzyme, putative strong similarity to ATP:citrate lyase
[Capsicum annuum] GI:13160653; contains Pfam profiles
PF00549: CoA-ligase, PF02629: CoA binding domain
Length = 608
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +1
Query: 103 QPRGTGLVRISGGKKTLLSLTLVWAL*GDMRGVA*VGDRFARSSLKNHYFHCFITYSVGR 282
+P G V SGG + T+ G G+A GD F S+L +H F +
Sbjct: 166 RPGSVGFVSKSGGMSNEMYNTVARVTDGIYEGIAIGGDVFPGSTLSDHILR-FNNIPQIK 224
Query: 283 KRCAVDNIGGR 315
+ +GGR
Sbjct: 225 MMVVLGELGGR 235
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 288 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 178
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 288 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 178
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 336 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 241
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At3g06650.1 68416.m00774 ATP-citrate synthase, putative /
ATP-citrate (pro-S-)-lyase, putative / citrate cleavage
enzyme, putative strong similarity to ATP:citrate lyase
[Capsicum annuum] GI:13160653; contains Pfam profiles
PF00549: CoA-ligase, PF02629: CoA binding domain
Length = 608
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 103 QPRGTGLVRISGGKKTLLSLTLVWAL*GDMRGVA*VGDRFARSSLKNH 246
+P G V SGG + T+ G G+A GD F S+L +H
Sbjct: 166 RPGSVGFVSKSGGMSNEMYNTIARVTDGIYEGIAIGGDVFPGSTLSDH 213
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 90 SSETTAKGNGLGENQR-GKEDPVELDSSLGIVRRHER 197
+S+T +G+G N+ +E P LDS+ GI + H R
Sbjct: 134 ASQTFYQGSGTQSNRSFDRESPSNLDSTSGISQPHNR 170
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative
(SYD) similar to transcriptional activator HBRM [Homo
sapiens] GI:414117; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain; identical to cDNA putative
chromatin remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.5 bits (58), Expect = 7.0
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 90 SSETTAKGNGLGENQR-GKEDPVELDSSLGIVRRHER 197
+S+T +G+G N+ +E P LDS+ GI + H R
Sbjct: 134 ASQTFYQGSGTQSNRSFDRESPSNLDSTSGISQPHNR 170
>At4g39070.1 68417.m05533 zinc finger (B-box type) family protein
salt-tolerance protein - Arabidopsis thaliana,
PID:e224078
Length = 242
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 526 DQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNSP 413
D+A+ C R V +LA HLR+SLT P ++P
Sbjct: 20 DEAALCNGCDRHVHFANKLAGKHLRFSLTS-PTFKDAP 56
>At4g29570.1 68417.m04216 cytidine deaminase, putative / cytidine
aminohydrolase, putative identical to cytidine deaminase
homolog DesA [Arabidopsis thaliana] GI:4836443, cytidine
deaminase 8 (CDA8) [Arabidopsis thaliana] GI:5080714;
similar to cytidine deaminase (CDD) [Arabidopsis
thaliana] GI:3046700; contains Pfam profile PF00383:
Cytidine and deoxycytidylate deaminase zinc-binding
Length = 293
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 553 AVPMR--TEHLDQASFCPFAPREVSVLAELALGHLRYSLTDVP 431
A PMR H++ S+ F P+ +S L A+ H R ++ P
Sbjct: 2 AQPMRFMLNHIETESYGAFTPQNLSPLINRAIPHTRAQISGSP 44
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -1
Query: 372 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 247
TA + T+ T+G + PA I L P+R++ + + +
Sbjct: 18 TAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,658,648
Number of Sequences: 28952
Number of extensions: 304594
Number of successful extensions: 863
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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