Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0390
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.075
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    28   1.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   4.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 242 IEGFAPRPQKKY*EPAFSYRLLRVPTPSILSFR 144
           +E  AP PQ  Y E +F+  ++  PTPS  +F+
Sbjct: 861 LESPAPEPQPSYEEESFNATVIHAPTPSTATFQ 893


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 284 HITHNPSAPWA 252
           HITH+PS PWA
Sbjct: 88  HITHSPSCPWA 98


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 275 HNPSAPWALNLIEGFAPR-PQKKY*E-PAFSYRLLRVPTPSILSFRPRKFQSIII 117
           H P+ PW  +L++ + P+ P+  +   P F + +      SI+   PR  ++ ++
Sbjct: 822 HYPTCPWISDLLKTYFPQDPEVPFLAFPDFPFNIKLDLRESIIGLNPRTLEAKLL 876


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,820
Number of Sequences: 5004
Number of extensions: 50501
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)