Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0390
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055           33   0.23 
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167...    30   1.6  
09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465           27   8.7  
01_07_0059 + 40805196-40805381,40805593-40805925                       27   8.7  

>10_01_0249 - 2601376-2601547,2611800-2612464,2612549-2613055
          Length = 447

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +3

Query: 192 KCRFSILFLRSRGESLYEVQRPGCAGIMCYVIKSMTEDDQGRDRRCYRSHPLNYFPALSP 371
           K RF IL + +  +   +V+ P  A +   +I S+  D+Q  + + +  HP NY      
Sbjct: 305 KKRFPILKVATFHKIKNQVKIPVAAAVFHNIILSLNGDEQWLNNQPHNIHPSNYVDLPDG 364

Query: 372 D*INRWAVGLGK*KMSRL 425
           D  N  +   GK K S++
Sbjct: 365 DEGNDQSTNQGKGKFSQI 382


>05_05_0362 +
           24415257-24415481,24415585-24415835,24416659-24416755,
           24417272-24417820,24418029-24418482,24418747-24418860,
           24418940-24419023,24419499-24420067
          Length = 780

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +3

Query: 192 KCRFSILFLRSRGESLYEVQRPGCAGIMCYVIKSMTEDDQGRDRRCYRSHPLNY 353
           K RF IL + +  +   +V+ P  A +   +I+S+  D+Q  + + +  HP NY
Sbjct: 467 KKRFPILKVATFHKIENQVKIPVAAAVFHNIIRSLNGDEQWLNNQPHNIHPSNY 520


>09_02_0391 + 8482996-8483216,8484146-8484194,8484559-8487465
          Length = 1058

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 318 DRRCYRSHPLNYFPALSPD*INR-WAVGLG-K*KMSRLFLQDSYRSTVVCEEC 470
           DRRC RS PL   PAL PD +   + V  G K   + +F +D   ++ VC  C
Sbjct: 50  DRRCSRSIPLRPPPAL-PDLLGACFCVDEGRKTPKTLIFPRDERNASSVCRCC 101


>01_07_0059 + 40805196-40805381,40805593-40805925
          Length = 172

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 323 SVPALIIFGHRLNHITHNPSAPWALNLIEGFAP 225
           + P L IF HR  H  H+P+   + +    FAP
Sbjct: 111 AAPELSIFDHRSTHHGHHPAYSSSSSFAPSFAP 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,050,813
Number of Sequences: 37544
Number of extensions: 329523
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)