Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0390
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)                   27   8.9  

>SB_46116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 92  NTYFMITIYH-VNGHK*KIKYFTSCRIPAAR 3
           NTY+ +  Y  V+ ++   KY+++ RIPAAR
Sbjct: 136 NTYWSLAYYRWVDNYQETKKYYSNYRIPAAR 166


>SB_907| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
          Length = 681

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 113 CYTTFHFNTYFMITIYHVNGHK*-KIKYFTSCRIPAAR 3
           C  T   + ++  ++YH       ++KY TSC IP  R
Sbjct: 91  CIITTQNSEFYAASVYHPQTQSMMQLKYLTSCLIPVTR 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,895,321
Number of Sequences: 59808
Number of extensions: 395669
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)