Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0390
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 323 SVPALIIFGHRLNHITHNPSAP 258
           S PA I  GH  +H  H P  P
Sbjct: 452 SYPAAIQIGHTPHHHPHPPETP 473



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +3

Query: 60  NVVDGNHKVCVKVKSGITRNNNRLKFSW 143
           NVV  N+  C+ V  GI ++  ++  +W
Sbjct: 127 NVVVKNNGTCLYVPPGIFKSTCKIDITW 154


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 435 DSYRSTVVCEEC 470
           DSY+S + C++C
Sbjct: 142 DSYKSNLKCDKC 153


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 354 SNLVGVTCNTFGPGLDH 304
           ++LV   CN  G GL H
Sbjct: 529 ADLVVYACNVVGSGLSH 545


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 515 ASPIKHKIVVMNVIRFSYLHIAGLY 589
           A+   + +V++ V+R  YLH A  Y
Sbjct: 58  ATVFGNTLVILAVVRERYLHTATNY 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,586
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)