Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0389
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...   115   4e-27
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...   107   7e-25
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    75   6e-15
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    60   1e-10
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    48   8e-07
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    47   2e-06
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    29   0.42 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   0.73 
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    28   0.97 
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   5.2  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   6.8  
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    25   6.8  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   6.8  
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    25   6.8  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   9.0  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score =  115 bits (277), Expect = 4e-27
 Identities = 53/130 (40%), Positives = 81/130 (62%)
 Frame = +1

Query: 127 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 306
           ++Y+ G+WV A S   F V NP  +  +A V DM  ++ + A+  A  AF +++++  KE
Sbjct: 25  RSYIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKE 84

Query: 307 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 486
           R  ILRRW+DL  +N D+LA ++T E+GK L +AKGEV Y   F++WFA  A  I+G+  
Sbjct: 85  RYAILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSS 144

Query: 487 PSPWPNKQIL 516
            S  P  +I+
Sbjct: 145 MSSNPQNRII 154


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score =  107 bits (258), Expect = 7e-25
 Identities = 45/132 (34%), Positives = 86/132 (65%)
 Frame = +1

Query: 127 QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 306
           Q++V G+W+ + +N  F V NPA   ++ +V D+  ++ + A+  A+ AF+T+K+ T  +
Sbjct: 19  QSFVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQ 78

Query: 307 RSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEII 486
           RS++L RW +L  +N D+L +++T E+GKPL++A+ EV   + +L+W+A  A    G++ 
Sbjct: 79  RSQLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVA 138

Query: 487 PSPWPNKQILLT 522
           PS   ++  L++
Sbjct: 139 PSSLQSQNFLIS 150


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 74.9 bits (176), Expect = 6e-15
 Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
 Frame = +1

Query: 133 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERS 312
           Y+NGEW K+     +   +P+ + V+A+V     K+   A+ +A  AF+TWK     E+ 
Sbjct: 24  YINGEWHKSAET--WETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEKG 81

Query: 313 RILRRWFDLCEKNTDNLAEVITAESGKPL-AEAKGEVAYGNSFLEWFADSARHINGEIIP 489
            +L +  +L EK+ D LA +   +SGKPL + A+G+V    + L + A  A  I G++IP
Sbjct: 82  ELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVIP 141

Query: 490 S 492
           +
Sbjct: 142 T 142


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
 Frame = +1

Query: 133 YVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASNAFQT---WKDTTAK 303
           ++N + V +       V++P+ + ++ EV D D +D   A+  A  AFQT   W+  ++ 
Sbjct: 26  FINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSSA 85

Query: 304 ERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHINGEI 483
           +R R L R  D  E+N + LA + T ++GK +  A+G+V        ++   A    G+ 
Sbjct: 86  QRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQT 145

Query: 484 I 486
           I
Sbjct: 146 I 146


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 48.0 bits (109), Expect = 8e-07
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +1

Query: 190 PADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERSRILRRWFDLCEKNTDNLAE 369
           P D S++ EV   +  D   +++ A  A + WK T+  ER   L+   +   +N D  AE
Sbjct: 10  PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69

Query: 370 VITAESGKPLAEAK-GEVAYGNSFLEW 447
           +   ++GK L +A  GE+      + W
Sbjct: 70  IACKDTGKTLVDAAFGEILVTLEKINW 96


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
 Frame = +1

Query: 124 NQAYVNGEWVKAKSNLVFAVH--NPADDSVVAEVPDMDSKDAQNALLTASNAFQT--WKD 291
           N  +++G++V         +   NPA + ++    +  +KD  +A+  A N F++  W  
Sbjct: 21  NSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGIWAK 80

Query: 292 TTAKERSRILRRWFDLCEKNTDNLAEVITAESGKPLAEAKGEVAYGNSFLEWFADSARHI 471
              K+R  +LR+   +  +  + LA + T   GKP   A  ++       E++A+ A   
Sbjct: 81  WPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVAETD 140

Query: 472 NGEIIPSPWPN 504
           N   +  P PN
Sbjct: 141 N-PTVKVPLPN 150


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -2

Query: 201 VVSWIMNCKHQITFCLNPFSVHIGLIPQ*MQTSALIHSYIFWLST 67
           V SWI+ C      CL P S+ +G +   M TS  ++ +IF L++
Sbjct: 83  VWSWIIGC-----ICLIPVSISLGELASSMPTSGGLYFWIFTLAS 122


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 145 EWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTASN 270
           E  +   NL+ AVH  AD     E PD+D  + Q   L  +N
Sbjct: 565 ELQQQNQNLLSAVHELADRMEKDEKPDLDGAEIQEETLIKAN 606


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 424 YGNSFLEWFADSARHINGEIIPSPWPNKQI 513
           +G   L  FA +A+ +NG I+ +PW  +++
Sbjct: 410 HGALILSEFAGAAQSLNGSIVINPWNTEEL 439


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 190 PADDSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKE 306
           P DD V  EV  +  K ++ +    +NAF+ + D  + E
Sbjct: 61  PEDDEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVE 99


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = +1

Query: 91  VNQCRRLHLLRN-QAYVNGEWVKAKSNLVFAVHNPADDSVVAEVPDMDSKDAQNALLTAS 267
           ++   RL+LLR  QA     W + +SN         D  +++ VPD  ++  + A +   
Sbjct: 175 IDDYNRLNLLRTFQAGSPYLWTRWQSN---------DPHLISSVPDYSARPRKYAHVPIL 225

Query: 268 NA----FQTWKDTTAKERSRILRRWFD 336
           N        +KD     RSR +  WFD
Sbjct: 226 NLCLWNHAYYKDYGLLNRSRYIDTWFD 252


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 479 KSYRAHGRISRYFS 520
           ++YRAHGR++ Y S
Sbjct: 128 RTYRAHGRVTAYLS 141


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
 Frame = +1

Query: 199 DSVVAEVPDMDSKDAQNALLTASNAFQTWKDTTAKERSRI----LRRW--FDL-CEK-NT 354
           DS+  E P + S+  ++  ++ S      K     ER++I    LR+   F L  EK NT
Sbjct: 130 DSITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKGPNFSLQIEKLNT 189

Query: 355 DNLAEVITAES 387
           D  AE+IT+ S
Sbjct: 190 DLTAEMITSRS 200


>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 479 KSYRAHGRISRYFS 520
           ++YRAHGR++ Y S
Sbjct: 128 RTYRAHGRVTAYLS 141


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 151 VKAKSNLVFAVHNPADDSVVAEVPDMDSKDA 243
           +K    ++ A HN +DD ++ E+ D+   +A
Sbjct: 386 IKVNEEILVADHNVSDDILMEEIDDVGITEA 416


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -1

Query: 433 NYHKQLPLWPQRVVSQIQLLSLLPNYRYFFHISQTTSL 320
           N H +L +W Q+ +    +L L+P ++    I     L
Sbjct: 5   NLHDKLTIWRQQQIELKGMLQLIPKFQSLNEIRYVVGL 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,398
Number of Sequences: 5004
Number of extensions: 47049
Number of successful extensions: 159
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)