Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0388
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   4.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   8.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   8.5  

>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 343 QYGPHARVLLAVSLVYFSRNTHRLHY 266
           QY P  + LL + ++ F  +TH  HY
Sbjct: 115 QYTPARKYLLVLPIILFLMSTHYTHY 140


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 295 NTREKRQEVRERGVHTADTLLPARR 369
           N REKRQE+ E  V+    +L  R+
Sbjct: 53  NRREKRQELAEEAVYCRSEMLSQRK 77


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 545 WRCAPTFESANRYIAGTPI 601
           W+C  TFE  +RY+    I
Sbjct: 131 WKCVQTFEGHSRYVMSLAI 149


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 362 AGSSVSAVWTPRSRTSCRFSRVFQQEYSST 273
           +GSS S+ +TP S TS   S V  ++ SS+
Sbjct: 740 SGSSSSSSYTPASSTSTTTSSVSSRQSSSS 769


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 467 ENTAEKVFINRAKR-ILIVSSDGHLAQWRCAPTFES 571
           +NT    F ++ ++ I  VS DG L  W+ +P F++
Sbjct: 190 KNTVVSGFFSKDQQTIYTVSKDGALFVWKYSPLFQA 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,740
Number of Sequences: 5004
Number of extensions: 38163
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)