Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0388
         (604 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    29   3.7  
AY071145-1|AAL48767.1|  520|Drosophila melanogaster RE18068p pro...    29   4.9  
AE014297-1231|AAF54580.2|  520|Drosophila melanogaster CG4674-PA...    29   4.9  

>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
           protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
 Frame = +3

Query: 300 TRETARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPTLDSTRILL 479
           T  T+R T    P C  T +  +  +   R+ T T+ C+PT    R    P+        
Sbjct: 325 TTSTSRPTTTT-PRCTTTPSTSRPTTTTPRSTTKTSTCAPTTTTPRPTTTPSTSRPTTTT 383

Query: 480 RRSS*TEPSAY**CQATGTWRSGGARRPSSL----RTGTSPARPS 602
            RS+ T  ++        +  +   RRP++      T TS +RP+
Sbjct: 384 PRSTTTTSTSRPTTTTPRSTTTTTTRRPTTTTPRSTTTTSTSRPT 428


>AY071145-1|AAL48767.1|  520|Drosophila melanogaster RE18068p
           protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 362 AGSSVSAVWTPRSRTSCRFSRVFQQEYSSTPL 267
           +GS  S   +P +RTS R S V    YSS+PL
Sbjct: 396 SGSQSSQYGSPSARTSLRSSNVPYMPYSSSPL 427


>AE014297-1231|AAF54580.2|  520|Drosophila melanogaster CG4674-PA
           protein.
          Length = 520

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 362 AGSSVSAVWTPRSRTSCRFSRVFQQEYSSTPL 267
           +GS  S   +P +RTS R S V    YSS+PL
Sbjct: 396 SGSQSSQYGSPSARTSLRSSNVPYMPYSSSPL 427


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,901
Number of Sequences: 53049
Number of extensions: 427177
Number of successful extensions: 1103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)