Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0388
         (604 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD...    28   5.5  
At3g08670.1 68416.m01007 expressed protein                             28   5.5  
At4g31970.1 68417.m04545 cytochrome P450 family protein similar ...    27   9.6  
At3g59000.1 68416.m06576 F-box family protein contains F-box dom...    27   9.6  
At1g75140.1 68414.m08728 expressed protein                             27   9.6  

>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 317

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 437 LEELAYVRLDENTAEKVFINRAKRILIVSSDGHLAQWRCAPTFESAN 577
           L  L   R+ +  +E    NR  RI+IVSS+GH   +R    F+  N
Sbjct: 144 LTNLLLERMKKTASES---NREGRIVIVSSEGHRFAYREGVQFDKIN 187


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
 Frame = +3

Query: 309 TARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPTLDSTRILLRRS 488
           T+ ++R+  P  R       S  D  R   ++   +PT+  + S + P + ++R   R S
Sbjct: 212 TSSASRSSTP-SRIRPGSSSSSMDKARPSLSSRPSTPTSRPQLSASSPNIIASRPNSRPS 270

Query: 489 S*TE--PSAY**CQATGTWRSGGARRPSSLRTGTSPARPS 602
           + T   PS+      +G   SGG R  S+ RTG S +RPS
Sbjct: 271 TPTRRSPSSTSLSATSGPTISGG-RAASNGRTGPSLSRPS 309


>At4g31970.1 68417.m04545 cytochrome P450 family protein similar to
           cytochrome P450 82C1 (CYP82C1p)(GI:2739004) [Glycine
           max]; flavonoid 3 ,5'-hydroxylase, Campanula medium,
           PATCHX:D1003951
          Length = 523

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +2

Query: 203 DLFSKKTAMSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEELERR 382
           DL+S          +  + K  +E MS+   +    GK+Y   GS+ P       +  + 
Sbjct: 161 DLYSLWVKKGGSEPVMVDLKSWLEDMSLNMMVRMVAGKRYFGGGSLSPEDAEEARQCRKG 220

Query: 383 AESTHHYCGVFT 418
             +  H  G+FT
Sbjct: 221 VANFFHLVGIFT 232


>At3g59000.1 68416.m06576 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 491

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 386 ESTHHYCGVFTDELLA--PLEELAYVRLDENTAEKVFINRAKRILIVSSDGHL 538
           +S   Y   F   LLA   LEEL  V ++   ++    N + + L + SDGHL
Sbjct: 170 DSVWFYVDKFETLLLALPALEELVLVDVNWLDSDVTISNASLKTLTIDSDGHL 222


>At1g75140.1 68414.m08728 expressed protein
          Length = 617

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 30/84 (35%), Positives = 36/84 (42%)
 Frame = +3

Query: 318 STRAWGPYCRYTAARPKSWSDALRARTTTAACSPTNCWRRSRNWPTLDSTRILLRRSS*T 497
           S  AWGP   +++    S S      TTTA  S        RN   +D     LRR    
Sbjct: 499 SLTAWGPDDPFSSTTMSSSS------TTTAQNSSAFSESTRRNDDHMD-----LRRRY-V 546

Query: 498 EPSAY**CQATGTWRSGGARRPSS 569
            PS Y    ATG +RS G+  PSS
Sbjct: 547 SPSRYPPGAATGAYRSVGSNDPSS 570


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,979,606
Number of Sequences: 28952
Number of extensions: 195723
Number of successful extensions: 520
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)