Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0387
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 27 1.6
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 4.8
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 4.8
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 4.8
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.3
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 25 6.3
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 25 6.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 8.4
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 25 8.4
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +1
Query: 271 PMNLKISATCPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDEN 450
P N+ + P N E L+ L +KC E D FC V + G GY R+
Sbjct: 245 PANMSLFIMKPYNHEEYMLKALNEAKKC-EPTDSAFC--VGAVIVQNGKIVSTGYSRERP 301
Query: 451 G 453
G
Sbjct: 302 G 302
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 461 IQVPFSSLRYP-ILQAHPYSHFSSSTNWQKMISFFSMHF*GLH 336
+Q+ + L +P PYS S W+ + S F+ +F +H
Sbjct: 231 LQLAAALLAFPEFTNGSPYSLLLSDDRWEYLASLFTSNFTAVH 273
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 567 QLAQLCAVLLTTHALSAVREVFIHWTRHSWTLVLRYTSSI 448
QL + C V TH L A RE+ IH+ + +VL +S+
Sbjct: 359 QLTKACGV---THKLRAFRELLIHFPKWRGHVVLIQITSL 395
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 412 GCACKIGYLRDENGTCIP 465
G KIGY DE+G C+P
Sbjct: 111 GVYLKIGYEMDESGFCLP 128
>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 455 VPFSSLRYPILQAHPYSHFSSSTNW 381
VPFS++ PI Y+ F S+T+W
Sbjct: 56 VPFSAINLPIRFLIFYNAFRSNTSW 80
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Frame = -3
Query: 576 TFRQLAQLCAV--LLTTHALSAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFAGTSIFA 403
T L +C + + A E+F +W + L Y S F++ YF T I
Sbjct: 106 TVGMLINVCVITSFASVDIYRAKDEIFANWVDMDYYEKLSYIGSAFITPALYFTLTLILF 165
Query: 402 L 400
L
Sbjct: 166 L 166
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 281 KFIGKFTSDYVHRTTWWHHKC 219
+F+G+ S+ VH + H KC
Sbjct: 206 EFVGRIFSELVHTVAYLHSKC 226
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 498 HWTRHSWTLVLRYTSSIFVS 439
HW+ H W L+ SI VS
Sbjct: 886 HWSEHIWLTTLKKPQSIHVS 905
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 521 LRACVVRRTAQSWASCL 571
+RAC+V+ Q WA CL
Sbjct: 2057 VRACIVQGFQQIWACCL 2073
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -3
Query: 522 SAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFAGTSIF 406
S + ++F++ RHSW+ + Y I V+ S + F
Sbjct: 424 SGLMDIFVYLWRHSWSNGIDYAKWISVALPSMLSNKVFF 462
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,135
Number of Sequences: 5004
Number of extensions: 58279
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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