Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0387
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    30   1.2  
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342...    29   3.7  

>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/61 (29%), Positives = 23/61 (37%)
 Frame = +1

Query: 394 EEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSE 573
           ++ C   CAC       ENGTC  +    +  C       +CAK  CR   C       E
Sbjct: 457 QQMCGKDCACV------ENGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAASRE 510

Query: 574 C 576
           C
Sbjct: 511 C 511


>07_01_0453 +
           3420727-3420800,3421666-3421792,3422348-3422431,
           3422550-3422644,3423063-3423154,3423326-3423379,
           3424221-3424273,3424472-3424539,3424777-3424852,
           3425159-3425242,3425793-3425941,3426375-3426492,
           3426583-3426699,3426950-3427170,3427503-3427536,
           3427585-3427685,3427832-3427943,3428379-3428504,
           3428579-3428716,3428808-3428858,3428938-3429050,
           3430253-3430318,3430582-3430729,3430826-3430930,
           3431017-3431118,3431495-3431567,3431647-3431813,
           3431906-3432028
          Length = 956

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 473 LSCGIQVPFSSLRYPILQAHPYSHFSSST 387
           LSC    PFS+L +P L +  + HF  +T
Sbjct: 483 LSCSALWPFSTLGWPDLSSEDFKHFYPAT 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,246
Number of Sequences: 37544
Number of extensions: 353399
Number of successful extensions: 786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)