Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0387
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    41   8e-06
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    41   8e-06
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.2  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 41.1 bits (92), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 298 CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKC 477
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+P+ KC
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 41.1 bits (92), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 298 CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKC 477
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++   C+P+ KC
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNKKKVCVPRSKC 91


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +1

Query: 349 KCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVP 489
           K ++    +  Q  D      G    I Y+ DENG  +     PT P
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQGSHIPTAP 107


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 423 QNRISERRKWNLYTAR 470
           QNR  E   WNL T R
Sbjct: 30  QNRSQEEDLWNLATDR 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,035
Number of Sequences: 438
Number of extensions: 4490
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)