Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0387
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica...    28   4.1  
At4g19960.1 68417.m02923 potassium transporter family protein si...    28   5.4  
At1g68140.1 68414.m07783 expressed protein                             28   5.4  
At5g49670.1 68418.m06150 hypothetical protein                          27   9.5  
At1g77770.2 68414.m09056 expressed protein                             27   9.5  
At1g77770.1 68414.m09055 expressed protein                             27   9.5  
At1g32190.1 68414.m03959 expressed protein                             27   9.5  

>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
           to floral homeotic protein HUA1 [Arabidopsis thaliana]
           gi|16797661|gb|AAK01470
          Length = 524

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 388 VDEEKCEYGCACKIGYLRDENGTCI-PQDKCPTVPC-PVNEYFTNCAK 525
           +  ++C+YG  CK  + R+E    +  QD  P  P  P+  ++    K
Sbjct: 235 IKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGK 282


>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -3

Query: 573 FRQLAQLCAVLLTTHALSAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFA 421
           F Q   +  V+L T  L  +  + + W  H W LVL +T   F  ++SYF+
Sbjct: 485 FSQWTAVVLVMLVTTLLMVLIMLLV-WHCH-WILVLIFTFLSFFVELSYFS 533


>At1g68140.1 68414.m07783 expressed protein
          Length = 334

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 457 CIPQDKCPTVPCPVNEYFTNCAKGMCRQENCTELGKLSECK 579
           C  Q K  T+  P  + F N  K +C QENC   G   E +
Sbjct: 123 CRGQVKGWTIVQPARD-FLNLKKRICMQENCVYAGTFKELR 162


>At5g49670.1 68418.m06150 hypothetical protein 
          Length = 1184

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 195 LSNSIGFTTFMMPPSRPVNVIRSKFPNEF 281
           + +S G TT   PP +P+NV+ +K  ++F
Sbjct: 275 IDSSSGNTTSEKPPKQPMNVLVAKHASKF 303


>At1g77770.2 68414.m09056 expressed protein
          Length = 264

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = +1

Query: 337 CRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTN 516
           CRP  C   +    C  +D+ +  YG     G        C  Q K  TV      +F N
Sbjct: 53  CRPYMCATSSRFANC--LDQYRKSYGNE-NSGQPELLCPLCRGQVKGWTVVKDARMHF-N 108

Query: 517 CAKGMCRQENCTELGKLSECKTQSTE 594
             +  C Q+NC+ LG   + K    E
Sbjct: 109 SKRRTCMQDNCSFLGNFRKLKKHMKE 134


>At1g77770.1 68414.m09055 expressed protein
          Length = 265

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/86 (27%), Positives = 33/86 (38%)
 Frame = +1

Query: 337 CRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDENGTCIPQDKCPTVPCPVNEYFTN 516
           CRP  C   +    C  +D+ +  YG     G        C  Q K  TV      +F N
Sbjct: 53  CRPYMCATSSRFANC--LDQYRKSYGNE-NSGQPELLCPLCRGQVKGWTVVKDARMHF-N 108

Query: 517 CAKGMCRQENCTELGKLSECKTQSTE 594
             +  C Q+NC+ LG   + K    E
Sbjct: 109 SKRRTCMQDNCSFLGNFRKLKKHMKE 134


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = +1

Query: 448 NGTCIPQDKCPTVPCPVNEYFTNCAKGMCRQENC---TELGKLSECKTQS 588
           +G C P   CP   CP       C  G C    C   T  G  S CK  S
Sbjct: 298 SGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPS 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,415
Number of Sequences: 28952
Number of extensions: 298758
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)