Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0386
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    39   0.089
UniRef50_Q31B01 Cluster: Small GTP-binding protein domain; n=5; ...    33   4.4  
UniRef50_Q22UP5 Cluster: Cation channel family protein; n=1; Tet...    33   4.4  
UniRef50_A0D296 Cluster: Chromosome undetermined scaffold_35, wh...    33   4.4  

>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 39.1 bits (87), Expect = 0.089
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +2

Query: 194 QFLFYICFCNYVMF*LSFCINIRNVYFTRNYISN*RNLIF-YLVNLHNYFI--*RIYILK 364
           ++  YI + NY+ +   + INI N+YF +N   N  N I  +++  +NY+I    + + +
Sbjct: 613 KYNLYIIYNNYIKYLYKYNINI-NLYFIKNLFYNNNNFIHNHIIYKNNYYIYNNNMNLYQ 671

Query: 365 KISNILYYIFNNDLFNASFY 424
              NIL  I NN L+N  FY
Sbjct: 672 YNKNIL--INNNLLYNKLFY 689


>UniRef50_Q31B01 Cluster: Small GTP-binding protein domain; n=5;
           Prochlorococcus marinus|Rep: Small GTP-binding protein
           domain - Prochlorococcus marinus (strain MIT 9312)
          Length = 499

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 138 FLDLLTYYLKISVLNRSILLYTIFFFFKYIYASSNVDNKPFPR 10
           F+ +L  Y+  S+L R + +YT+ F    +Y   N+D K F +
Sbjct: 12  FIFILFLYILFSILTRIVNIYTLLFLIITMYIFYNIDKKLFKK 54


>UniRef50_Q22UP5 Cluster: Cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 2710

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +2

Query: 194 QFLFYICFCNYVMF*LSFCINIRNVYFTRNYISN*RNLIFYLVNLHNYFI*RIYILKKIS 373
           QF+  I  C + +F + F I++   YF R+ I   R LI        Y     ++  ++S
Sbjct: 352 QFIIRISSCAFFLFLIDFLISLNTAYFDRDSIITKRKLI-----ARYYIFSTKFVTDQVS 406

Query: 374 NILYYIFNNDLFNASFYQTPYYNL 445
             L+ +    L+  SF   P +NL
Sbjct: 407 --LFVLAIKILYQESFIYNPNHNL 428


>UniRef50_A0D296 Cluster: Chromosome undetermined scaffold_35, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_35,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 913

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 265 CIFYT*LYF*LT*FN--ILLSQFT*LFYMTYLYIKKNIKYFILHFQQ*FI*RLFLSNSIL 438
           C+ +T  YF     N  IL   +  L+ + Y    KN+  FI  +QQ F+    +S+ I 
Sbjct: 248 CLLFTMAYFKFHFNNQFILFGGWPKLWMLLYFIQLKNLLNFIGSWQQSFLMGQLVSSLIE 307

Query: 439 *FRLIGFYSIIVFFF 483
            F+LIG   II  FF
Sbjct: 308 LFKLIGLLLIIQHFF 322


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 511,962,018
Number of Sequences: 1657284
Number of extensions: 9131384
Number of successful extensions: 21331
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21303
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)