Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0386
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.0  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 356 ILKKISNILYYIFNNDLFNASFYQTPYYN 442
           IL+   N+L Y   N + N    QTPYYN
Sbjct: 810 ILRGEVNLLNYSLENVVLNIFKKQTPYYN 838


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +3

Query: 201 CFTFVFVITLCFDYPSVLILEMYILHVIIFLIN 299
           C+ F+   +LC   P  L+  +Y+  +++F ++
Sbjct: 634 CYDFMIGASLCSHQPKFLLSLVYLTDLVLFFLD 666


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 594 LYTTSLSLDKDALGWAFACPPVLV 523
           L+T SL L  DA+  AF C  +LV
Sbjct: 369 LWTNSLGLISDAIHMAFDCIAILV 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,159
Number of Sequences: 5004
Number of extensions: 41644
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)