Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0386
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1572 - 34527730-34527859,34528077-34528136,34528253-345283...    27   9.6  

>04_04_1572 -
           34527730-34527859,34528077-34528136,34528253-34528375,
           34528506-34528960,34529343-34529876,34530638-34531501
          Length = 721

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 156 NE*IIKFLDLLTYYLKISVLNRSILLYTIFFFFKYIYASS 37
           NE +  F  LLT+YL +  +N   L +++   F Y Y  S
Sbjct: 178 NEGVAIFALLLTFYLFVRAVNTGSLAWSLASAFGYFYMVS 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,635
Number of Sequences: 37544
Number of extensions: 205002
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)