Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0385
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    99   3e-22
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    29   0.24 
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    28   0.73 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   2.2  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   3.9  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   3.9  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   6.8  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    24   9.0  
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    24   9.0  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 98.7 bits (235), Expect = 3e-22
 Identities = 44/92 (47%), Positives = 57/92 (61%)
 Frame = +2

Query: 164 LHIAGLYGLYLCFTSAKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPLEILLMV 343
           L +  +YG++   T  +  T +FAI+ +     GITAG HRLWSH  YK K PLE  L  
Sbjct: 73  LPMIAIYGVFT--TPLQTKTLIFAIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAA 130

Query: 344 FNSIAFQNTIFTWVRDHRLHHKYTDTDADPHN 439
             + AF+ +I  W RDHR HH+YTDTD DP+N
Sbjct: 131 GGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYN 162


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 397 PVISHPCENGVLKSNTVEDHQQDLEGQFDFVT 302
           P I    EN + +SNTVE+  +++E QF+ V+
Sbjct: 297 PEIHESSENYLSRSNTVENEPENIEKQFESVS 328


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 35  SVDKTNETEYLNDNHVDYEKLIAPQASPIKHKIVVM 142
           S+   N  EYL D+ V+  KL   +  P+K K++ +
Sbjct: 28  SLTSINSAEYLYDSFVEISKLPLEKKLPLKWKLITV 63


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 224 SVFAIVLFFLGNFGITAGAHRLWSH 298
           SVF+IVL+FL N   TAG    W++
Sbjct: 632 SVFSIVLYFLTNLKRTAGG--FWTY 654


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 264 PKFPRKNNTIAKTDVANFAEVK 199
           P FP +N T  + +VANF  +K
Sbjct: 205 PAFPDENITALQKNVANFTSIK 226


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 29  PNSVDKTNETEYLNDNHVDYE---KLIAPQASPIKHKIVVM 142
           PN V   N +  ++ NH+D E   KLI  +   ++ +I V+
Sbjct: 589 PNQVSMPNISNIVSTNHLDVETQMKLIMDENQRLREQIAVL 629


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 29  PNSVDKTNETEYLNDNHVDYEKLIAPQASPIKHKI 133
           P+S+ K NE    N+NH  YE     +A  ++ KI
Sbjct: 413 PDSIAKLNELTASNENH--YELKTYDRAERLRQKI 445


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 294 LIMVTKSNCPSRSC*WSSTVLLFRTPFSHG*EITGYITSIRTLM 425
           +++VT S   S SC   +T+L+   P +      GY  S+ T +
Sbjct: 175 VLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSVTTTL 218


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 50  NETEYLNDNHVDYEKLI 100
           N   YL+D  VD+EK+I
Sbjct: 96  NSLYYLDDEEVDFEKII 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,383
Number of Sequences: 5004
Number of extensions: 35332
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)