Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0385
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0349 - 3082700-3083407                                           30   0.95 
07_01_0548 - 4061829-4062956                                           29   1.3  
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416...    29   1.3  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    29   2.2  
05_01_0372 - 2913518-2916562,2916674-2917528                           28   2.9  
08_01_0350 - 3087631-3088461                                           28   3.8  
02_04_0326 - 22058648-22058659,22058660-22058812,22059412-22059654     27   8.8  
01_05_0810 - 25435193-25435323,25435434-25436360,25436459-254369...    27   8.8  

>08_01_0349 - 3082700-3083407
          Length = 235

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 209 AKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 325
           A+L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 104 AELSVKFFAILVCFLLAFLLNVQSIRYYSHTGLLVNVPL 142


>07_01_0548 - 4061829-4062956
          Length = 375

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 20  KMPPNSVDKTNETEYLNDNHVDYE 91
           ++PP   DK  +  +LNDNH D+E
Sbjct: 180 EVPPAIFDKKIDALFLNDNHFDFE 203


>03_02_0693 -
           10441253-10441294,10441404-10441511,10441594-10441677,
           10441765-10443062,10443111-10444804,10444890-10444957,
           10445057-10445186,10445292-10445415,10445551-10445711,
           10446714-10446868
          Length = 1287

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 23  MPPNSVDKTNETEYLNDNHVDYEKLIAPQASPI 121
           M PNS D     E  ND+H  Y  + +PQA P+
Sbjct: 394 MVPNSSDVVPAEEENNDHHQGYVCVPSPQAKPV 426


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 299 NGYKVKLPLEI-LLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHN 439
           N Y V+  LE  LL +F  + F NT    V    +H+ +   DA+P N
Sbjct: 736 NEYSVRRALEAYLLWLFGWVMFTNTHGHAVDKGLIHYAWAIVDAEPEN 783


>05_01_0372 - 2913518-2916562,2916674-2917528
          Length = 1299

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 210 QNWLHRFLLLCYSS 251
           Q+W H+ LLLCYSS
Sbjct: 855 QSWRHQMLLLCYSS 868


>08_01_0350 - 3087631-3088461
          Length = 276

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 215 LATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPL 325
           L+   FAI++ FL  F +   + R +SH G  V +PL
Sbjct: 126 LSIKFFAILVCFLVAFLLNVQSIRYYSHTGILVNVPL 162


>02_04_0326 - 22058648-22058659,22058660-22058812,22059412-22059654
          Length = 135

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 203 TSAKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVKLPLEILLMVF 346
           +S + A  V  IV+  + +FGI  G+     H+G +V   +  +LMVF
Sbjct: 84  SSQRNAAVVGNIVIVLVNSFGIL-GSDFTTKHHGREVTFTVSAILMVF 130


>01_05_0810 -
           25435193-25435323,25435434-25436360,25436459-25436987,
           25437089-25437190
          Length = 562

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 151 YHVHHYNFVFDGRGLG 104
           +H+H YNF   GRG+G
Sbjct: 465 FHLHGYNFFVVGRGVG 480


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,166,265
Number of Sequences: 37544
Number of extensions: 213150
Number of successful extensions: 478
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)