Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0385
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.9  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = -3

Query: 355 NTVEDHQQDLEGQFDFVTIMRPQTMSSSCNTKVP 254
           N V  HQ   E + +FV I  P+ +     T  P
Sbjct: 178 NDVVQHQSGSEAEAEFVCIATPEAIELHFTTDHP 211


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 231 LLLCYSSLGTLVLQLELIVCGL 296
           +LLCY     LVL+   IVCG+
Sbjct: 702 ILLCYLVTFALVLRPTDIVCGI 723


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 434 EGLHQCPYTCDVA 396
           E   QCPYT D A
Sbjct: 557 ESEEQCPYTVDAA 569


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 110 ASPIKHKIVVMNVIRFSYLHIAGLY 184
           A+   + +V++ V+R  YLH A  Y
Sbjct: 58  ATVFGNTLVILAVVRERYLHTATNY 82


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 204 PQQNWLHRFLLLCYSSLGTLV 266
           P   W+H +L L  + L TL+
Sbjct: 538 PIHTWIHPWLPLLRNRLDTLI 558


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,388
Number of Sequences: 438
Number of extensions: 2269
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)