Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0381
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.2  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 564 NQLEALLNYSKTWSGYSFTFAG 499
           N+LE L N     SGY  +FAG
Sbjct: 485 NKLEDLRNKKSCHSGYKDSFAG 506


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 564 NQLEALLNYSKTWSGYSFTFAG 499
           N+LE L N     SGY  +FAG
Sbjct: 485 NKLEDLRNKKSCHSGYKDSFAG 506


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 564 NQLEALLNYSKTWSGYSFTFAG 499
           N+LE L N     SGY  +FAG
Sbjct: 485 NKLEDLRNKKSCHSGYKDSFAG 506


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -1

Query: 580 YV*LQKSIGSPTKL*QNLVWV*LYFCRVEDTRGFPRGRGN 461
           Y  ++K++  P  L   L+W   ++C       F R +GN
Sbjct: 291 YKKIKKAV-PPLSLHGQLLWREFFYCAATKNPNFDRMQGN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,481
Number of Sequences: 438
Number of extensions: 3009
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)