Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0381
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...    30   1.3  
At3g42690.1 68416.m04439 Ulp1 protease family protein contains P...    27   9.4  
At1g23300.1 68414.m02914 MATE efflux family protein similar to r...    27   9.4  

>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1006

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 513 FTFAGSRILVDFQEDVGTMKSSCQGFNKQGIYMTTTALPRATDYDDV 373
           F  +GSR + D   D  T+K +CQ   K+ + +T+   P     +DV
Sbjct: 703 FDESGSRAVEDIDWDALTVKGTCQEIEKRYLRLTSAPDPATVRPEDV 749


>At3g42690.1 68416.m04439 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345, At4g04130
          Length = 1009

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 305 RLTILDPSPTGRKRK*YIHSSHPTSS*SVALG 400
           + TI+DP PTG K+K    + HP    S A G
Sbjct: 395 KATIVDPPPTG-KKKPISKTKHPQPKTSAAAG 425


>At1g23300.1 68414.m02914 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 515

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 449 LLFIVPTSSWKSTSILDPAKVKLYPDQ 529
           LLFI+  ++WK  + L  A++K + DQ
Sbjct: 464 LLFIIYRTNWKKEASLAEARIKKWGDQ 490


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,746
Number of Sequences: 28952
Number of extensions: 245588
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)