Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0380
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...   213   2e-56
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...   111   6e-26
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    29   0.70 
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    28   1.2  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   1.6  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    27   2.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.7  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   3.7  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    26   4.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.5  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   8.6  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.6  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score =  213 bits (520), Expect = 2e-56
 Identities = 96/158 (60%), Positives = 120/158 (75%)
 Frame = +2

Query: 137 SVPDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQPDPAVELIKQRLSNVKHKIL 316
           +VP +AP+HCPG  SE+AG ASAC GCPNQ ICAS    + DP + L+ +RL  +KHKIL
Sbjct: 6   TVPLDAPEHCPGPSSENAGTASACEGCPNQQICASAPRGE-DPDLPLVVERLKEIKHKIL 64

Query: 317 ILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGVRGEQVHNSGSGW 496
           +LSGKGGVGKST +S +  GL S+  D  +G++D DICGPS PR++GV  E+ H S  GW
Sbjct: 65  VLSGKGGVGKSTFSSQLAWGL-SLEEDKQIGLMDVDICGPSIPRIMGVEKEEAHQSSKGW 123

Query: 497 SPVYVTDNLSLMSIGFLLGSPDDAVIWRGPKKNGMIKQ 610
           SP+YV  NL++MSIGFLL S D +VIWRGPKKNG+IKQ
Sbjct: 124 SPIYVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQ 161


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score =  111 bits (268), Expect = 6e-26
 Identities = 57/114 (50%), Positives = 75/114 (65%), Gaps = 7/114 (6%)
 Frame = +2

Query: 290 LSNVKHKILILSGKGGVGKSTVTSLIG---HGLASMSPDINVGILDADICGPSQPRVLGV 460
           +  V+H IL+LSGKGGVGKS+VT+ +    H     S  +  GILD D+ GPS PR+ G 
Sbjct: 1   MDKVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGK 60

Query: 461 RGEQ--VHNSGSGWSPVYV--TDNLSLMSIGFLLGSPDDAVIWRGPKKNGMIKQ 610
             E+  +H S +GW PVY   T  + LMS+GFLL S +D+V+WRGPKK  MI+Q
Sbjct: 61  DAERNRIHQSSAGWVPVYTDETKEIGLMSLGFLLTSKNDSVVWRGPKKAAMIRQ 114


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
 Frame = +2

Query: 263 PAVELIKQRLSNVKH-KILILSGKGGVGKST--VTSLIGHGLASMSPDI 400
           PA E  ++ +  ++H +++++SG+ G GKST  V  ++ H L+S   D+
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDL 626


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 DPAVELIKQRLSNVKHKILILSGKGGVGKSTVT 358
           DP    ++  L     K + + GKGGVGK+T +
Sbjct: 4   DPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTS 36


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 564 SSGLPNRNPIDISDKLSVT*TGDHPEPELWTCSP 463
           S+GL   N I+ ++  S+    DH EPE + C+P
Sbjct: 41  SNGLQQTNQIEQAES-SLNAEADHSEPERYGCTP 73


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 296 NVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILD 418
           N+ H  L++SG  G+GK+T    + H L  + P    G+L+
Sbjct: 53  NMPH--LVISGMPGIGKTTSILCLAHAL--LGPAYKEGVLE 89


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 427 LRPEPAASVGRPRRAGPQLRLGVVPCLRYG*LVADV 534
           LRP P A   R   +  ++ +GVVP LR   L  D+
Sbjct: 277 LRPPPQAEARRLAESQKEVFIGVVPSLRRNHLYNDL 312


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 308 KILILSGKGGVGKSTVTSLIGHGLASMSPDIN 403
           +I++L+G  G GK+T+  +I H       +IN
Sbjct: 417 RIMMLTGLAGAGKTTLAHVIAHQAGYKVLEIN 448


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 274 FYCGVRLRCFSRCANVLIRASSTG*SFTSILALSSRAMLRRVVWYAAHI*YYYLTTINSL 95
           F   + ++CF    + L+            L LSS   LRR  W    +  + LT ++ L
Sbjct: 99  FDASIAVKCFGVAVSYLVIVGDLMPQIAPSLGLSSPMFLRRQTWIVFAL--FVLTPLSFL 156

Query: 94  KPKFSL 77
           K   SL
Sbjct: 157 KRLDSL 162


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 150  TRRNIALELKARMLVKLQPVLDAL 221
            ++RNI L L+ RM++++ P  D+L
Sbjct: 2054 SKRNILLNLEHRMMLQMAPDCDSL 2077


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +2

Query: 320 LSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQPRVLGV 460
           L+G+ G+GKST+   +     ++   I +  ++ ++ G   P +  V
Sbjct: 213 LTGRNGIGKSTLLRALSRREIAIPTHITILHVEQEMTGDDTPALQSV 259


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 305 HKILILSGKGGVGKSTVTSLI 367
           +K ++LSG  G+GK+T   L+
Sbjct: 409 YKAVLLSGPPGIGKTTAAHLV 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,318
Number of Sequences: 5004
Number of extensions: 57459
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)