Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0380
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 4e-14
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 32 0.32
SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15) 31 0.56
SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10) 31 0.74
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 31 0.97
SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015) 30 1.7
SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8) 29 3.0
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08) 28 5.2
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 6.9
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15) 28 6.9
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0) 28 6.9
SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022) 27 9.1
>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2070
Score = 64.5 bits (150), Expect(2) = 4e-14
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = +2
Query: 506 YVTDNLSLMSIGFLLGSPDDAVIWRGPKKNGMIKQ 610
YV DNL +MS+GFLL P DAVIWRGPKKNG+IKQ
Sbjct: 270 YVEDNLGVMSVGFLLAKPTDAVIWRGPKKNGLIKQ 304
Score = 30.7 bits (66), Expect(2) = 4e-14
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 320 LSGKGGVGKSTVTSLIGHGLAS 385
L +GGVGKST T+ + HGLA+
Sbjct: 243 LQTQGGVGKSTFTAHLAHGLAA 264
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +2
Query: 470 QVHNSGSGWSPVYV--TDNLSLMSIGFLLGSPDDAVIWRGPKKNGMIKQ 610
Q+ + W PVY L +MSIGFLL S +DAV+WRGPKKN MIKQ
Sbjct: 146 QLAGIAARWVPVYTGPDQRLGVMSIGFLLHSKEDAVVWRGPKKNAMIKQ 194
>SB_30493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = +2
Query: 281 KQRLSNVKHKILILSGKGGVGKSTVTS-----LIGHGLASMS 391
K ++ VK IL+ SGKGGVGKST L+ G+ MS
Sbjct: 59 KWPIAGVKQVILVASGKGGVGKSTTAENQMKPLVNFGMPCMS 100
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 143 PDNAPQHCPGTQSEDAGKASACAGCPNQNICASGEASQP 259
P PQ+CP + A KA AC C +GEA QP
Sbjct: 312 PSQLPQNCPAGEEVAASKA-ACQPCAAGEYSNTGEACQP 349
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 164 CPGTQSEDAGKASACAGCPNQNICAS-GEASQPDPAVE 274
C Q G S C CP+ +CA + Q PA E
Sbjct: 286 CTAGQYSTVGSPSGCQTCPSNKVCADPSQLPQNCPAGE 323
>SB_31919| Best HMM Match : ArgK (HMM E-Value=7.6e-15)
Length = 415
Score = 31.5 bits (68), Expect = 0.56
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +2
Query: 266 AVELIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPSQP 445
A++ I ++ N K +L ++G GG GKS++ + P+ +G++ D PS+
Sbjct: 70 ALDTIHKKNKNSKTPVLGITGTGGAGKSSLVDELVRRFLIDFPEKTIGLISVD---PSKR 126
Query: 446 RVLG-VRGEQVHNSGSGWSPVYV 511
+ G + G+++ + VY+
Sbjct: 127 KTGGALLGDRIRMNAINNERVYM 149
>SB_5844| Best HMM Match : RA (HMM E-Value=2.1e-10)
Length = 280
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 290 LSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICG 433
L K + +++SG+ G GK+ T LI H L ++S ++ I G
Sbjct: 227 LKEKKSQCIVISGESGSGKTESTKLIVHHLTALSRKTQASDVEKTILG 274
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Frame = -3
Query: 600 IPFFFGPLHMTASSGLPNRNPIDISDKLSVT*T---GDHPEPELWTCSPRTPN-TRGWLG 433
+P + LH A +P R +S+T + G HP + + SPR+PN L
Sbjct: 513 LPSYAAVLHGQAPQSMPGRTSFPSQHSISMTSSLGRGPHPNVTISSQSPRSPNQVSPVLP 572
Query: 432 PQMSASSIPTFISG 391
P AS P G
Sbjct: 573 PSPRASHSPADTHG 586
>SB_47827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +2
Query: 215 CPNQNICASGEASQPDPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSP 394
C N A G DPA +L+ R+ +H+++I + G G + +L + +++P
Sbjct: 47 CKNLASMARGTVRDVDPADDLLILRVRTKEHEVIIAPERTGDGTFFIVAL--QSIRNVAP 104
Query: 395 DINVGIL 415
+ ++ +L
Sbjct: 105 EGSIALL 111
>SB_3385| Best HMM Match : 3_5_exonuc (HMM E-Value=0.0015)
Length = 437
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +2
Query: 209 AGCPNQNICASGEAS-----QPDPAVELIKQRLSNVKHKILILSGKGGVGK--STVTSLI 367
A PN N SG+ + + + +E +K++L + KI +S + S S +
Sbjct: 98 ASSPNVNNVVSGDCNCNGEIEEESKIETVKEKLGHSFEKIEAVSVETRTENNLSDFESTV 157
Query: 368 GHGLASMSPDINVGILD 418
G G AS+ N+G+LD
Sbjct: 158 GDGSASVDHIPNIGVLD 174
>SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)
Length = 306
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 489 EPELWTCSPRTPNTRGWLGPQM 424
E EL PR N RGW GPQ+
Sbjct: 4 ESELALYDPRAENGRGWCGPQV 25
>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1295
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 119 VISNMSSVPDNAPQHCPGTQSEDAGKASACAGCP 220
+I + + PD P+ T ED+ + CAGCP
Sbjct: 1213 IIGRVEADPDYLPRKKDFTVDEDSFRMKFCAGCP 1246
>SB_45343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 459 SAESRSTTPARGGPLFTLRITCR*CRSGSCWAVPTTPSYGGDRRR 593
+A + T PAR + + I+C CRS P G DR+R
Sbjct: 84 NASAAKTNPAREEEVVSDSISCEACRSSCHCRSPLPNKMGSDRQR 128
>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1379
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +2
Query: 311 ILILSGKGGVGKSTVTS-LIGHGLASMSPDIN 403
+++LSGKGG GK+ V S ++ + +SP+ N
Sbjct: 457 VVVLSGKGGCGKTYVVSKVLSEANSHISPNSN 488
>SB_5693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1429
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 305 HKILILSGKGGVGKSTVTSLIGHGLASMSP 394
H+++++SG+ G GK+ T + LA+ +P
Sbjct: 63 HQVIVISGESGAGKTESTKQLVQYLATANP 92
>SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08)
Length = 349
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 438 LGPQMSASSIPTFISGLIDARPCPISDVTVLFPTP 334
+GP++SAS IP I + A P P + L +P
Sbjct: 289 IGPRLSASPIPATIGPPLSASPIPATTAPPLSASP 323
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.9 bits (59), Expect = 6.9
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Frame = +1
Query: 235 RIWRSIST*PRSRTDKT----TSLQCKAQNSDLVR*RGGRKKYCDITNWARSCINES*YK 402
++WR++S RT+ T Q K + D+V+ G +K + W R C E K
Sbjct: 94 KVWRTLSPNKSHRTELVSRTPTPTQQKYKKGDIVQMPNGIRKKFNGKQWRRLCSREGCNK 153
Query: 403 RRYTR--C-RHL 429
R C RHL
Sbjct: 154 ESQRRGFCSRHL 165
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 ASGEASQPDPAVELIKQRLSNVKHKILILSGKGGVGK-STVTSLIGHGLASMS 391
ASG +SQP + I ++ ++++ KIL + G + K + VTS +S++
Sbjct: 526 ASGSSSQPSSDAQSIAKQQADLQAKILSILNPGTLSKVAAVTSQTASAASSLT 578
>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 302 KHKILILSGKGGVGKSTVTSLIGHGLAS 385
K K +++ GK GVGKST+ S + + A+
Sbjct: 162 KTKRILIEGKAGVGKSTLVSEMAYDWAT 189
>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
Length = 1427
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 260 DPAVELIKQRLSNVKHKILILSGKGGVGKSTVTSLIGHGLASMSPDINVGILDADICGPS 439
D A+ L+ + KIL LSG +G +T+ +++ +P +G LD CG
Sbjct: 838 DSALSLVTLIQESALLKILNLSGNPSLGNTTLHAIL--NTLMDTPLSQLGTLDLSSCGVR 895
Query: 440 QP 445
P
Sbjct: 896 SP 897
>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1747
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 494 WSPVYVTDNLSLMSIGFLLGSPDDAVIWRGPKKNG 598
W P +T +LS + F+ + D ++++GP++ G
Sbjct: 1048 WLPKLMTYSLSDLEFEFMTKTADGLLVYQGPEREG 1082
>SB_24131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +2
Query: 335 GVGKSTVTSLIG---HGLASMSPDINVGILDADICGPSQPRVLGVRGEQV 475
GVG TV L H + ++SPD+ + + + PS+P VLG E++
Sbjct: 62 GVGGRTVDKLQAYDLHVVQNLSPDVVILEIGTNNLPPSKPEVLGSAIEEL 111
>SB_10802| Best HMM Match : Rho_N (HMM E-Value=0.0022)
Length = 178
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -3
Query: 480 LWTCSPRTPNTRGWLGPQMSASSIPTFISGLIDARPCPISDVTVLFPTPP 331
L P+TP + G + IP+ SG + P P +V +L PT P
Sbjct: 41 LTNAPPQTPPAKLIKGLPLPPRIIPSNTSGRVLDEPVPEINVPILKPTQP 90
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,700,108
Number of Sequences: 59808
Number of extensions: 479116
Number of successful extensions: 1393
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1391
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -