Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0380
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.3  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -1

Query: 482 SCGPALRGRPTLAAGSGRRCRHRVYLRLYQDSLMQDRAQLVMSQYFF 342
           +C P  R  P     SGRR R R     Y      DRA  ++   FF
Sbjct: 391 ACSPPPRQTPPSRKESGRRRRRRT--PRYNSVSKIDRASRIVFPLFF 435


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +2

Query: 335 GVGKSTVTSLIGHGLASMSPDINVGILD--ADICGPSQPRVLGVRGEQVHNSGSGWSPVY 508
           G G     S IG  L  +SP+I +  +D    I  PS      V   +V   G  + P  
Sbjct: 213 GAGTGGTISGIGRKLKELSPNIKIIAVDPKGSILDPSSDSQNEVGFYEVEGIGYDFIPTV 272

Query: 509 VTDNL 523
           +  N+
Sbjct: 273 LDRNV 277


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 314 LILSGKGGVGKSTVTSLIGHGL 379
           L+     G+GK  +  L+G G+
Sbjct: 11  LVTGANSGIGKCLIECLVGKGM 32


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 272 LLRGQVEMLLQMRKCFD*GIQHRLKLYQHPRFE 174
           LL  + E +L+ R C +  + HRL L     F+
Sbjct: 41  LLEDESERMLRKRGCIEACLFHRLALMNDNVFD 73


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 556 TAQQEPDRHQRQVIRNVNRGPPRA 485
           T Q+ P  H R   + V+ G P A
Sbjct: 609 TIQEPPQWHTRSTEKRVSAGTPAA 632


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 221 NQNICASGEASQPDPAVELIKQRLSN 298
           + ++  S EAS+   AVE I + L N
Sbjct: 435 SDSVLLSPEASKATEAVEFIAEHLRN 460


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 307 VLYIGETLFYQFYCGVR 257
           VL I + L    YCG+R
Sbjct: 675 VLLISDRLSRDLYCGIR 691


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 307 VLYIGETLFYQFYCGVR 257
           VL I + L    YCG+R
Sbjct: 713 VLLISDRLSRDLYCGIR 729


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,191
Number of Sequences: 438
Number of extensions: 4438
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)