Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0375
         (552 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015C48C6 Cluster: response regulator; n=3; Campylo...    32   7.7  
UniRef50_UPI0000F31098 Cluster: UPI0000F31098 related cluster; n...    32   7.7  

>UniRef50_UPI00015C48C6 Cluster: response regulator; n=3;
           Campylobacter concisus 13826|Rep: response regulator -
           Campylobacter concisus 13826
          Length = 586

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 467 LTYASRRSHNTP*ATSE*DEIKRKYGTHLFNGNSDSAKEPHNMQLFKFIYSRNFNSIPDL 288
           +T A  + +N   AT + +EI + Y  +L N N+    +  +    K  Y +N N+  D 
Sbjct: 53  ITEADIKEYNKHLATQKAEEILKDYSQNLINSNNKIYSDEPSNGFSKNAYFKNINATDDA 112

Query: 287 T-ISVLQS 267
           T + VL+S
Sbjct: 113 TMLPVLKS 120


>UniRef50_UPI0000F31098 Cluster: UPI0000F31098 related cluster; n=1;
           Bos taurus|Rep: UPI0000F31098 UniRef100 entry - Bos
           Taurus
          Length = 635

 Score = 32.3 bits (70), Expect = 7.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 141 KSFNFLICLVYENKIINEKNRSGNIPFPYRIISQRHYLVLVITLQH 278
           K +  + CL+  N   N+K+ SGN P  Y   S+ H+ V  + LQH
Sbjct: 374 KEYQVVKCLLESNAKPNKKDISGNTPLIY-ACSRGHHEVAALLLQH 418


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,855,276
Number of Sequences: 1657284
Number of extensions: 9870454
Number of successful extensions: 19234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19227
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 36238783989
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)