Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0375
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   5.6  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    25   5.6  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   7.4  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   7.4  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   9.8  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 370 FPLNKCV--PYFLFISSYSLVAYGVLWLRLDA 459
           FPL   +  P  L +S+Y+   YG+L+  L+A
Sbjct: 297 FPLRLLIFEPILLVVSTYTAFVYGILYGLLEA 328


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +1

Query: 343 LCGSLAESEFPLNKCVPYFLFISSYSLVAYGVLWLRLDA*VNSLAQPMLNLREFFV 510
           LC  L   EFPL   + + +    Y       LW  ++  VN+  +    +++  V
Sbjct: 159 LCDYLRSGEFPLTVLIHHVMLYQYYPKSLQEALWAAVEHYVNNSGEAYSTVQKLAV 214


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 437 YYGYAWTRKLTHWLNPCSTLENFLLFPNDLMQRTKNE 547
           Y G+ WT  +T ++   STL   LLF  +   RT  E
Sbjct: 249 YLGWRWTEYITSFMGFFSTL--CLLFMKECYSRTITE 283



 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 370 FPLNKCVPYFLFISSYSLVAYGVLWLRLDA 459
           F L  C P    ++ Y    YG+L+L L+A
Sbjct: 321 FVLLFCEPIVFLLTLYMSFVYGILYLLLEA 350


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 385 IYLMETPTPLRNHITCNY 332
           ++++E PTP+RN +  N+
Sbjct: 733 LFMVELPTPIRNEVNDNH 750


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 275 LQSYDKY*IVTL*NYSIWKWNISGSIFLVYNFILV 171
           LQS+    +  L   S+WK N++    L+ NFIL+
Sbjct: 187 LQSHQSVELYRLYQTSLWKNNLADFDDLLLNFILL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,272,505
Number of Sequences: 5004
Number of extensions: 46521
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)