Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0375
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155...    29   3.3  
03_05_0814 + 27907158-27907368,27907981-27908270,27910250-279104...    27   7.5  
02_01_0402 - 2934074-2937217                                           27   7.5  

>03_05_1068 +
           30114682-30114868,30114947-30115239,30115354-30115591,
           30115977-30117871
          Length = 870

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 446 YAWTRKLTHWLNPCSTLENFLLFPN 520
           Y W + ++HWLN  + +E F++  N
Sbjct: 517 YCWHQLISHWLNTHAVMEPFVIATN 541


>03_05_0814 +
           27907158-27907368,27907981-27908270,27910250-27910493,
           27910589-27910927,27911036-27911121,27911218-27911325,
           27911471-27911778,27911864-27912127,27912227-27913010
          Length = 877

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 449 AWTRKLTHWLNPCSTLENFLLFPN 520
           AW + ++HWLN  + +E F++  N
Sbjct: 521 AWHQLISHWLNTHAVIEPFVIATN 544


>02_01_0402 - 2934074-2937217
          Length = 1047

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 431 MEYYGYAWTRKLTHWLNPCSTLENFLLFPNDL 526
           +  YG + + K+ HWL+  + LE   L  N L
Sbjct: 453 LSLYGCSLSGKIPHWLSKLTNLEMLFLHDNQL 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,848,277
Number of Sequences: 37544
Number of extensions: 235075
Number of successful extensions: 371
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)