Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0375
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006684-8|AAF39963.2|  132|Caenorhabditis elegans Hypothetical ...    29   2.9  
EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long is...    27   6.8  
AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobuli...    27   6.8  
AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhes...    27   6.8  

>AC006684-8|AAF39963.2|  132|Caenorhabditis elegans Hypothetical
           protein T02H6.3 protein.
          Length = 132

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 8   RGYTSICFISHDLS*SHFFIYCSTQLLKKTLRSLINRQN*IIGSEI 145
           R YT +  I+H    SHF+  CS ++  K + +LIN  +  +  E+
Sbjct: 3   RTYTVLLLIAHAHVQSHFYYPCSARIFWK-IHALINNTDGFVTREV 47


>EF584655-1|ABQ57413.1| 1187|Caenorhabditis elegans LAD-2 long
           isoform protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 185 YKREKSIRKYSISISNNFTTSLFSTCH 265
           +K E +IRKYSI I  N T  + ++ H
Sbjct: 862 WKAENTIRKYSIKIPANSTYKVINSFH 888


>AF456361-1|AAL60232.1| 1187|Caenorhabditis elegans immunoglobulin
           domain-containingprotein Y54G2A.25 protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 185 YKREKSIRKYSISISNNFTTSLFSTCH 265
           +K E +IRKYSI I  N T  + ++ H
Sbjct: 862 WKAENTIRKYSIKIPANSTYKVINSFH 888


>AC024817-49|AAF59572.3| 1187|Caenorhabditis elegans L1 cam adhesion
           molecule homologprotein 2, isoform a protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 185 YKREKSIRKYSISISNNFTTSLFSTCH 265
           +K E +IRKYSI I  N T  + ++ H
Sbjct: 862 WKAENTIRKYSIKIPANSTYKVINSFH 888


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,248,470
Number of Sequences: 27780
Number of extensions: 248371
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)