Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0374
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   0.59 
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    26   1.4  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   1.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   1.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    23   9.6  

>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 217 RVAKTKIPSTTYNHKKKNYIKK 152
           R  K  I S+T +HKKK Y++K
Sbjct: 70  RKLKNPIESSTTSHKKKGYVRK 91


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 9/38 (23%), Positives = 23/38 (60%)
 Frame = -1

Query: 143 YILHYTSENKMTRGVIAPGESHLHYTLLASLTIFESIS 30
           +++HY +   ++  ++AP  S +H+T+  S  +F  ++
Sbjct: 97  FLVHYANRALVSPLLMAPQVSPMHWTVFVSAVLFNFLN 134


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 217 RVAKTKIPSTTYNHKKKNYIKKF 149
           R   T +PS  YNHK  N +  F
Sbjct: 655 RPLATDLPSVIYNHKHPNVVSPF 677


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 226 LLKRVAKTKIPSTTYNHKKKNYIKK 152
           LL+ V   ++P++ Y+H + +YI++
Sbjct: 172 LLEFVCSCRLPASKYDHPRSHYIRR 196


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 101 PRASFCFQTCNAK 139
           PRAS+C QT N K
Sbjct: 28  PRASYCPQTINVK 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,260
Number of Sequences: 5004
Number of extensions: 25155
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)