Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0374
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3)                    27   2.9  
SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.9  
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   27   5.1  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       26   9.0  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_8198| Best HMM Match : DUF1430 (HMM E-Value=3.3)
          Length = 211

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 120 FRRVMQNVAVNFLM*FFFLWLYVVLGIFVLATRFNKLC 233
           +R +  N+AV  +M    +WL V + +FV+ T     C
Sbjct: 107 YRYISSNIAVLAIMCHQIIWLSVAMAMFVVGTSAIDTC 144


>SB_2629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 538

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 57  SQQCIVKVALPR-SNDPARHFVFRRVMQNVAVNFLM*FFFL 176
           S   I K+A+ R SN+P +  + R +   + + F++ FFF+
Sbjct: 181 SYAAIWKIAVTRMSNNPTKRSLKREIRTAITIAFVIGFFFI 221


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 199 IPSTTYNHKK-KNYIKKFTATFCITRLKTK*RAGSLLRGRATFTIHCWLL 53
           + S +  HKK K   K F +      L  K +  S+LRG+   +++C ++
Sbjct: 357 LESESTEHKKTKKISKNFWSVMVRELLSVKKKVSSVLRGKRQVSVNCRMM 406


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 113  FCFQTCNAKCSSKFLNVIF 169
            FC + CN+KC    +N++F
Sbjct: 1897 FCGKNCNSKCDIYNINLVF 1915


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 282 RRNSLFHMLVVCVCVYSI 335
           RRN L  MLV CV V+ I
Sbjct: 866 RRNHLIKMLVTCVVVFDI 883


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 59   PAMYSEGGSPPEQ*PRASFCFQTCNAKCSS 148
            PA  +  GSPP   P +  C   C A C S
Sbjct: 1125 PAQETFEGSPPCPSPCSVICLPNCPASCCS 1154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,150
Number of Sequences: 59808
Number of extensions: 172897
Number of successful extensions: 270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)