Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0374
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   2.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   2.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   2.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   7.1  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    20   7.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.4  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/30 (23%), Positives = 22/30 (73%)
 Frame = -1

Query: 131 YTSENKMTRGVIAPGESHLHYTLLASLTIF 42
           YT+++ ++   ++P  ++L+Y+ +AS +++
Sbjct: 247 YTAQDGISGMALSPMTNNLYYSPVASTSLY 276


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/30 (23%), Positives = 22/30 (73%)
 Frame = -1

Query: 131 YTSENKMTRGVIAPGESHLHYTLLASLTIF 42
           YT+++ ++   ++P  ++L+Y+ +AS +++
Sbjct: 247 YTAQDGISGMALSPMTNNLYYSPVASTSLY 276


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/30 (23%), Positives = 22/30 (73%)
 Frame = -1

Query: 131 YTSENKMTRGVIAPGESHLHYTLLASLTIF 42
           YT+++ ++   ++P  ++L+Y+ +AS +++
Sbjct: 247 YTAQDGISGMALSPMTNNLYYSPVASTSLY 276


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 171 FLWLYVVLGIFVL 209
           F+W YV+  IF++
Sbjct: 225 FIWAYVIPLIFII 237


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 77  GGSPPEQ*PRASF 115
           GG+P E+ PR +F
Sbjct: 15  GGTPEEKRPRTAF 27


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 171 FLWLYVVLGIFVL 209
           F+W YV+  IF++
Sbjct: 225 FIWAYVIPLIFII 237


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 261 ITFNKN*RRNSLFHMLVVCV 320
           ITFN   RR +LF+ + + +
Sbjct: 234 ITFNITMRRKTLFYTVNIII 253


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 261 ITFNKN*RRNSLFHMLVVCV 320
           ITFN   RR +LF+ + + +
Sbjct: 234 ITFNITMRRKTLFYTVNIII 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,707
Number of Sequences: 438
Number of extensions: 1673
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)