Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0374
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30160.1 68417.m04289 villin, putative similar to  villin 2 (...    27   4.2  
At1g68380.1 68414.m07811 expressed protein contains Pfam profile...    27   4.2  

>At4g30160.1 68417.m04289 villin, putative similar to  villin 2
           (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
           (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
           profiles PF00626: Gelsolin repeat, PF02209: Villin
           headpiece domain
          Length = 974

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 199 IPSTTYNHKKKNYIKKFTATFCITRLKTK*RAGSLLRGRATFTIHCWLL 53
           +P  T N + K Y    T  FC+ + +     G  L+     T  C++L
Sbjct: 237 LPRKTANDEDKTYNSDITRLFCVEKGQANPVEGDTLKREMLDTNKCYIL 285


>At1g68380.1 68414.m07811 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 392

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 150 NFLM*FFFLWLYVVLGIFV 206
           N L+ FF LW+ V++GI V
Sbjct: 27  NLLLYFFILWIGVIVGIIV 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,936,596
Number of Sequences: 28952
Number of extensions: 122046
Number of successful extensions: 216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)