Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0373
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 33 0.026
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 32 0.046
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 32 0.046
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 28 0.57
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 27 0.99
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 26 2.3
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 26 3.0
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 26 3.0
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 7.0
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 7.0
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 25 7.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 24 9.3
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.026
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Frame = +2
Query: 5 LFSHVVTQFVVMCGQTALVLIFM---ISVFGVKN-NGNIVFVIMLTLLQGLCGMCFGFVI 172
+ ++++ F ++IF + ++ VKN +G ++ + G+ G
Sbjct: 62 IVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRWRNETGVDGESIWIFE 121
Query: 173 SAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWILRYVSLCLPLTLATNSLRSILTR 352
SA RNA+ +F+ L L IW I G+ I+R+ L L L L S+ T
Sbjct: 122 SADPSRPRNAVDQK--TFWYALYLYPFIWIILGIVAIIRFEFLWLALVAVAIGLTSVNTA 179
Query: 353 GWPFTDSDVYMGFVSTLA 406
+ D D + + LA
Sbjct: 180 AYSRCDKDAKRRWATELA 197
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 31.9 bits (69), Expect = 0.046
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 56 LVLIFMISVFGVKNNGNIVFVIMLTLLQGLCG-MCFGFVI 172
+V +F I++FGVK G + F++ + +CG + G +I
Sbjct: 203 IVFLFFINIFGVKGYGEMEFIMSTIKVVAMCGFIILGIII 242
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.9 bits (69), Expect = 0.046
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -1
Query: 178 GRYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHE-DEHQRRLPAHHHELGD 20
G++H+ + HA ++S EDD D ++HE D+ R PAH HE G+
Sbjct: 154 GKHHKGK-HAKGKGKKSHPKPEDDSVFFDDERPKHHEFDDEDREFPAH-HEPGE 205
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 28.3 bits (60), Expect = 0.57
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 229 PHAAAERGDLAHRRDALDPALR-VPLPAPHPR-HELAAVHPDAGLALHG 369
P + D+ D ++ L V +P HP ++ +HP G+ LHG
Sbjct: 167 PPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHG 215
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 0.99
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Frame = +2
Query: 23 TQFVVMCGQTALVLIFMISVFGVKNNGNIVFVIMLTLLQGLCGMCFGFVISAACELERNA 202
T +++C L F +FG++ + V+++ L G C+ IS+ ++
Sbjct: 149 THILLLCALAGLQDDFQPELFGLRAS-KACAVVLVEFLATRLG-CYLLNISSQSQV---L 203
Query: 203 IQLALGSF-YPTLLLSGVIWPIEGMPWILRYVSLCLPLTLATNSLRSI 343
LA + + L+L+ + E MPW+ R+V L + L A LRS+
Sbjct: 204 DLLAFSGYKFVGLILTSLSKLFE-MPWVTRFVFLYMYLATAFFLLRSL 250
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 337 VHPDAGLALHGLGRVHGLRVDVGLDRALPHRNPH 438
VH +G+A V G R D G + PH PH
Sbjct: 193 VHISSGMAALAYSIVIGKRCDHGTTKYRPHNVPH 226
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 25.8 bits (54), Expect = 3.0
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -2
Query: 258 QITPLSSSVG*NEPKASWIAFRSSSQAADITN 163
++TPL+ S+G + + W +F+ + D +N
Sbjct: 465 RLTPLAQSIGLLDDQTHWESFQRTKSLLDFSN 496
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 106 HRLRYHADFAARSVRHVLRVRDIGRLR-ARAERDPAGLGFVLPHAAAE 246
HRL+YH ++ H+L +R + + R +D A + + P A+++
Sbjct: 94 HRLKYHPTTKSKYPIHILALRGVDEWKIERFRKDGASVIVIDPIASSD 141
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 236 LLLSGVIWPIEGMPWILRYVSLCLPLTLA 322
L+L GV++ I W+ +VS +P+T A
Sbjct: 94 LILPGVLFFIFSAFWLWHHVSPAVPITFA 122
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 24.6 bits (51), Expect = 7.0
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +2
Query: 158 FGFVISAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWILRYVSLCLPLTLATNSLR 337
FG +++AC + A + F + +GV+ P + ++ P T L
Sbjct: 1353 FGQAVASACPNAQTASVVNSLLFTFVITFNGVLQPNSNLVGFWHWMHSLTPFTYLIEGLL 1412
Query: 338 SILTRGWP 361
S L G P
Sbjct: 1413 SDLVHGLP 1420
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 206 QLALGSFYPTLLLSGVIW 259
Q+ LG+F TLL S V+W
Sbjct: 182 QMLLGNFVSTLLFSLVLW 199
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 24.2 bits (50), Expect = 9.3
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +1
Query: 355 LALHGLGRVHGLRVDVGLDR 414
+ L+ +G +HGL +D+G ++
Sbjct: 186 MGLYAIGILHGLVIDIGYEK 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,370
Number of Sequences: 5004
Number of extensions: 30724
Number of successful extensions: 126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -