Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0373
(448 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein (sp... 32 0.22
Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.29
Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical pr... 31 0.29
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 31 0.38
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 31 0.38
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 31 0.38
Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical pr... 29 2.0
AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein. 29 2.0
Z22174-4|CAA80129.2| 361|Caenorhabditis elegans Hypothetical pr... 27 4.7
X91803-1|CAA62913.1| 880|Caenorhabditis elegans sodium-calcium ... 27 4.7
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 27 4.7
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 27 4.7
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 27 4.7
AL132858-14|CAJ90511.1| 873|Caenorhabditis elegans Hypothetical... 27 4.7
AL132858-13|CAB60477.1| 880|Caenorhabditis elegans Hypothetical... 27 4.7
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 27 4.7
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 27 4.7
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 27 4.7
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 27 6.2
Z81111-4|CAB03264.1| 415|Caenorhabditis elegans Hypothetical pr... 27 8.2
Z79602-2|CAB01889.1| 380|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U28738-12|AAK68400.1| 189|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform c protein.
Length = 189
Score = 31.9 bits (69), Expect = 0.22
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 160 EAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDE 62
E HAA T+ H DDVP +LD H H+++
Sbjct: 28 ENHAAMTVMDRDH--HDDVPALLDVVHVLHQED 58
>Z93395-2|CAB07705.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 31.5 bits (68), Expect = 0.29
Identities = 28/99 (28%), Positives = 37/99 (37%)
Frame = -1
Query: 307 QAEGHVAQXXXXXXXXXXXPAQQQRGVERTQGQLDRVPL*LASGRYHEPEAHAAQTLQQS 128
QA+ H Q QQQ ER Q + + H + H AQ Q S
Sbjct: 648 QAQQHQQQQERQQQERQQHERQQQ---ERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPS 704
Query: 127 QHDNEDDVPIILDAEHRYHEDEHQRRLPAHHHELGDDVR 11
Q +E EHR +EH+RR HH ++ R
Sbjct: 705 QDHHE---------EHRRRLEEHRRREEEHHRRQEEESR 734
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/107 (22%), Positives = 37/107 (34%)
Frame = -1
Query: 325 RGEGEGQAEGHVAQXXXXXXXXXXXPAQQQRGVERTQGQLDRVPL*LASGRYHEPEAHAA 146
RGE + Q Q Q+ ER Q + + + + + A
Sbjct: 624 RGESTSTSTTTTEQQHQRQHHQAQQAQQHQQQQERQQQERQQHERQQQERQQQDRQQQAQ 683
Query: 145 QTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLPAHHHELGDDVREQ 5
Q Q QH ++ P + H +EH+RRL H + R Q
Sbjct: 684 QHHQAQQHHSQQH-PAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQ 729
>Z83112-5|CAB05541.1| 905|Caenorhabditis elegans Hypothetical
protein ZC101.1 protein.
Length = 905
Score = 31.5 bits (68), Expect = 0.29
Identities = 28/99 (28%), Positives = 37/99 (37%)
Frame = -1
Query: 307 QAEGHVAQXXXXXXXXXXXPAQQQRGVERTQGQLDRVPL*LASGRYHEPEAHAAQTLQQS 128
QA+ H Q QQQ ER Q + + H + H AQ Q S
Sbjct: 648 QAQQHQQQQERQQQERQQHERQQQ---ERQQQDRQQQAQQHHQAQQHHSQQHPAQPAQPS 704
Query: 127 QHDNEDDVPIILDAEHRYHEDEHQRRLPAHHHELGDDVR 11
Q +E EHR +EH+RR HH ++ R
Sbjct: 705 QDHHE---------EHRRRLEEHRRREEEHHRRQEEESR 734
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/107 (22%), Positives = 37/107 (34%)
Frame = -1
Query: 325 RGEGEGQAEGHVAQXXXXXXXXXXXPAQQQRGVERTQGQLDRVPL*LASGRYHEPEAHAA 146
RGE + Q Q Q+ ER Q + + + + + A
Sbjct: 624 RGESTSTSTTTTEQQHQRQHHQAQQAQQHQQQQERQQQERQQHERQQQERQQQDRQQQAQ 683
Query: 145 QTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLPAHHHELGDDVREQ 5
Q Q QH ++ P + H +EH+RRL H + R Q
Sbjct: 684 QHHQAQQHHSQQH-PAQPAQPSQDHHEEHRRRLEEHRRREEEHHRRQ 729
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 31.1 bits (67), Expect = 0.38
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = -1
Query: 301 EGHVAQXXXXXXXXXXXPAQQQRGVERTQGQLDRVPL*LASGRYHEPEAHAAQTLQQSQH 122
+GH Q QQ R V Q Q + + A ++ + + + Q QQ QH
Sbjct: 107 QGHNVQQGYQRQQVANQIQQQNRAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHHQQPQH 166
Query: 121 DNEDDVPIILDAEHR----YHEDEHQRRLP 44
N + +HR +H +HQ P
Sbjct: 167 FNHPSQQNQMIMQHRQPQMHHNQQHQMVQP 196
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 31.1 bits (67), Expect = 0.38
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = -1
Query: 301 EGHVAQXXXXXXXXXXXPAQQQRGVERTQGQLDRVPL*LASGRYHEPEAHAAQTLQQSQH 122
+GH Q QQ R V Q Q + + A ++ + + + Q QQ QH
Sbjct: 107 QGHNVQQGYQRQQVANQIQQQNRAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHHQQPQH 166
Query: 121 DNEDDVPIILDAEHR----YHEDEHQRRLP 44
N + +HR +H +HQ P
Sbjct: 167 FNHPSQQNQMIMQHRQPQMHHNQQHQMVQP 196
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 31.1 bits (67), Expect = 0.38
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Frame = -1
Query: 301 EGHVAQXXXXXXXXXXXPAQQQRGVERTQGQLDRVPL*LASGRYHEPEAHAAQTLQQSQH 122
+GH Q QQ R V Q Q + + A ++ + + + Q QQ QH
Sbjct: 107 QGHNVQQGYQRQQVANQIQQQNRAVFMAQNQQGQQQISYAQAQHRQQQQNQQQHHQQPQH 166
Query: 121 DNEDDVPIILDAEHR----YHEDEHQRRLP 44
N + +HR +H +HQ P
Sbjct: 167 FNHPSQQNQMIMQHRQPQMHHNQQHQMVQP 196
>Z82060-4|CAB04885.2| 434|Caenorhabditis elegans Hypothetical
protein T27F6.6 protein.
Length = 434
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 28 VRGDVRADGAGAHLHDIGVRRQE*WEHRLRYHADFAARSVRHVLRVRDIGRLRARAERDP 207
+ GD+R + HLH R + + A A+ VRH R D+ + +P
Sbjct: 159 IDGDLRVNFYTTHLHAEYDRENDLYLPHRTAQAFELAQFVRHTARGADVVIVTGDLNMEP 218
Query: 208 AGLGF--VLPHA 237
LGF +L HA
Sbjct: 219 CDLGFRLILSHA 230
>Z75545-1|CAB61025.1| 665|Caenorhabditis elegans Hypothetical
protein K10D3.2 protein.
Length = 665
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 96 FLTPNTDIMKMSTSAVCPHITTNWVTTCENR 4
F NT ++ STS P +TN V+ C +R
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDR 315
>AB000913-1|BAA21715.1| 665|Caenorhabditis elegans UNC-14 protein.
Length = 665
Score = 28.7 bits (61), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 96 FLTPNTDIMKMSTSAVCPHITTNWVTTCENR 4
F NT ++ STS P +TN V+ C +R
Sbjct: 285 FFKSNTQLLTSSTSKTAPQTSTNIVSNCIDR 315
>Z22174-4|CAA80129.2| 361|Caenorhabditis elegans Hypothetical
protein K01B6.2 protein.
Length = 361
Score = 27.5 bits (58), Expect = 4.7
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 ILFSHVVTQFVVMCGQTALVLIFMISVFGVKNNGNIVFVIM-LTLLQGLCGMCFGFVISA 178
IL +V Q + + A +LIF S G N I F I L+LL+ FG ++
Sbjct: 4 ILMENVEVQHI---DRIAALLIFFTSFIGFACNTFIAFYIRRLSLLRN----SFGRLLQL 56
Query: 179 ACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWILRYVSLCL 307
+ +A+ + + +FY +L I P++ + R+ LCL
Sbjct: 57 --QAAGDAVFVLVWAFYFAPVLFFDIKPLQSLAIAARFAQLCL 97
>X91803-1|CAA62913.1| 880|Caenorhabditis elegans sodium-calcium
exchanger protein.
Length = 880
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 106 VPIILDAEHRYHEDEH-QRRLPAHHHELGDD 17
+PI+ D E+ HED + + P H EL DD
Sbjct: 581 IPIVNDDEYEKHEDFYIELGEPIWHRELADD 611
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 IVFVIMLTL-LQGLCGMCFGFVISAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWI 283
+V++I++ L L+ + G ++ A +ERN + + +L +S +I IEG P+
Sbjct: 26 VVWIIIIVLSLETIIGNA---MVVMAYRIERNISKQVSNRYIVSLAISDLIIGIEGFPFF 82
Query: 284 LRYV 295
YV
Sbjct: 83 TVYV 86
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 IVFVIMLTL-LQGLCGMCFGFVISAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWI 283
+V++I++ L L+ + G ++ A +ERN + + +L +S +I IEG P+
Sbjct: 26 VVWIIIIVLSLETIIGNA---MVVMAYRIERNISKQVSNRYIVSLAISDLIIGIEGFPFF 82
Query: 284 LRYV 295
YV
Sbjct: 83 TVYV 86
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 IVFVIMLTL-LQGLCGMCFGFVISAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWI 283
+V++I++ L L+ + G ++ A +ERN + + +L +S +I IEG P+
Sbjct: 26 VVWIIIIVLSLETIIGNA---MVVMAYRIERNISKQVSNRYIVSLAISDLIIGIEGFPFF 82
Query: 284 LRYV 295
YV
Sbjct: 83 TVYV 86
>AL132858-14|CAJ90511.1| 873|Caenorhabditis elegans Hypothetical
protein Y113G7A.4b protein.
Length = 873
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 106 VPIILDAEHRYHEDEH-QRRLPAHHHELGDD 17
+PI+ D E+ HED + + P H EL DD
Sbjct: 581 IPIVNDDEYEKHEDFYIELGEPIWHRELADD 611
>AL132858-13|CAB60477.1| 880|Caenorhabditis elegans Hypothetical
protein Y113G7A.4a protein.
Length = 880
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 106 VPIILDAEHRYHEDEH-QRRLPAHHHELGDD 17
+PI+ D E+ HED + + P H EL DD
Sbjct: 581 IPIVNDDEYEKHEDFYIELGEPIWHRELADD 611
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 IVFVIMLTL-LQGLCGMCFGFVISAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWI 283
+V++I++ L L+ + G ++ A +ERN + + +L +S +I IEG P+
Sbjct: 26 VVWIIIIVLSLETIIGNA---MVVMAYRIERNISKQVSNRYIVSLAISDLIIGIEGFPFF 82
Query: 284 LRYV 295
YV
Sbjct: 83 TVYV 86
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 IVFVIMLTL-LQGLCGMCFGFVISAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWI 283
+V++I++ L L+ + G ++ A +ERN + + +L +S +I IEG P+
Sbjct: 26 VVWIIIIVLSLETIIGNA---MVVMAYRIERNISKQVSNRYIVSLAISDLIIGIEGFPFF 82
Query: 284 LRYV 295
YV
Sbjct: 83 TVYV 86
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 IVFVIMLTL-LQGLCGMCFGFVISAACELERNAIQLALGSFYPTLLLSGVIWPIEGMPWI 283
+V++I++ L L+ + G ++ A +ERN + + +L +S +I IEG P+
Sbjct: 26 VVWIIIIVLSLETIIGNA---MVVMAYRIERNISKQVSNRYIVSLAISDLIIGIEGFPFF 82
Query: 284 LRYV 295
YV
Sbjct: 83 TVYV 86
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 27.1 bits (57), Expect = 6.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 124 HDNEDDVPIILDAEHRYHEDEHQRRLPAH 38
HD EDD D+E E++H+++LP H
Sbjct: 68 HDVEDDES---DSEKSLTEEQHEQKLPEH 93
>Z81111-4|CAB03264.1| 415|Caenorhabditis elegans Hypothetical
protein T01G5.4 protein.
Length = 415
Score = 26.6 bits (56), Expect = 8.2
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 188 LERNAIQLALGSFYPTLLLSGVIWPIEGMPWIL-RYVSLCLPLTLATNSLRSILTRGWPF 364
LE N + G + L+ + W I M WIL YV AT + I
Sbjct: 145 LEPNQKLDSYGRIHVVALIFSIPWLIAMMSWILYNYVENATIYFGATEESKVIYRVA--L 202
Query: 365 TDSDVYMGFVSTLAWIALFLIVTLTI 442
S+ Y+ F+ST+ +A F++V +I
Sbjct: 203 IISNFYIWFISTVC-LAFFVLVFTSI 227
>Z79602-2|CAB01889.1| 380|Caenorhabditis elegans Hypothetical
protein K09E9.2 protein.
Length = 380
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/60 (21%), Positives = 23/60 (38%)
Frame = -1
Query: 181 SGRYHEPEAHAAQTLQQSQHDNEDDVPIILDAEHRYHEDEHQRRLPAHHHELGDDVREQN 2
+G +H Q ++ HD + P+ DA H + + P ++ L V N
Sbjct: 210 AGNFHLAPGDPHQAMRSHVHDLHNLDPVKFDASHTVNHVSFGKSFPGKNYPLDGKVNTDN 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,339
Number of Sequences: 27780
Number of extensions: 184935
Number of successful extensions: 816
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -