Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0373
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.50 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.1  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 359 PFTDSDVYMGFVSTLAWIA-LFLIVT 433
           P T+SD Y+GF+  L  I  +F IV+
Sbjct: 58  PVTNSDTYIGFLFVLGLIVPVFTIVS 83


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -2

Query: 156 HMPHRPCSKVSMITKTMFPLFLTPNTDIMKMSTSAVCPHITTNWV 22
           H    PCS           L L  N  I+ ++ S     ++T W+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -2

Query: 156 HMPHRPCSKVSMITKTMFPLFLTPNTDIMKMSTSAVCPHITTNWV 22
           H    PCS           L L  N  I+ ++ S     ++T W+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -2

Query: 156 HMPHRPCSKVSMITKTMFPLFLTPNTDIMKMSTSAVCPHITTNWV 22
           H    PCS           L L  N  I+ ++ S     ++T W+
Sbjct: 78  HWVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDDLSTRWI 122


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 421 PHRNPHDPE 447
           PH +PH PE
Sbjct: 463 PHHHPHPPE 471


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +1

Query: 25  PVRGDVRADGAGAHLH 72
           P  G++  DG+  H H
Sbjct: 617 PTVGEISQDGSSPHFH 632


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 154  HAAQTLQQSQHDNEDDVPIILDAEHRYHED 65
            H  QT  +      +   + L  E+RYHED
Sbjct: 1087 HIIQTHGEMTDKQVEAYMLSLRDENRYHED 1116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,036
Number of Sequences: 438
Number of extensions: 2248
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)