Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0371
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    29   0.52 
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.1  

>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 438 ILWYFLYLIFELVVLFFIYEYLSFLLLTHDFFIPVVIH 551
           I WYFL           IY Y   L +   F +P+V+H
Sbjct: 111 INWYFLMTTLYYAYGESIYAYFHHLFIMDSFMLPLVLH 148


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 468 ELVVLFFIYEYLSFLLLTHDFFI 536
           EL+ LFF+ +Y +F+ +  D+FI
Sbjct: 183 ELLSLFFLKQYHNFMFVFRDYFI 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,520
Number of Sequences: 5004
Number of extensions: 24902
Number of successful extensions: 63
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)